Analysis of interatomic Contacts of Structural Units in PDB entry:
5DLV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DLV entry

There are 2 chains in PDB entry 5DLV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 56	GLU 859
B	GLY 56	TYR 509

There are 80 helices in PDB entry 5DLV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	94	Right-handed alpha
Helix 2	AA2	A	103	107	Right-handed 310
Helix 3	AA3	A	122	127	Right-handed alpha
Helix 4	AA4	A	132	138	Right-handed alpha
Helix 5	AA5	A	142	146	Right-handed 310
Helix 6	AA6	A	174	179	Right-handed 310
Helix 7	AA7	A	180	185	Right-handed alpha
Helix 8	AA8	A	185	195	Right-handed alpha
Helix 9	AA9	A	208	219	Right-handed alpha
Helix 10	AB1	A	221	226	Right-handed alpha
Helix 11	AB2	A	246	254	Right-handed 310
Helix 12	AB3	A	258	266	Right-handed alpha
Helix 13	AB4	A	280	293	Right-handed alpha
Helix 14	AB5	A	311	318	Right-handed alpha
Helix 15	AB6	A	321	323	Right-handed 310
Helix 16	AB7	A	324	345	Right-handed alpha
Helix 17	AB8	A	373	375	Right-handed 310
Helix 18	AB9	A	378	380	Right-handed 310
Helix 19	AC1	A	403	411	Right-handed alpha
Helix 20	AC2	A	426	428	Right-handed 310
Helix 21	AC3	A	429	433	Right-handed 310
Helix 22	AC4	A	456	460	Right-handed 310
Helix 23	AC5	A	480	484	Right-handed 310
Helix 24	AC6	A	507	516	Right-handed alpha
Helix 25	AC7	A	530	534	Right-handed 310
Helix 26	AC8	A	558	562	Right-handed 310
Helix 27	AC9	A	587	596	Right-handed alpha
Helix 28	AD1	A	645	649	Right-handed 310
Helix 29	AD2	A	659	663	Right-handed 310
Helix 30	AD3	A	665	672	Right-handed alpha
Helix 31	AD4	A	682	686	Right-handed 310
Helix 32	AD5	A	688	696	Right-handed alpha
Helix 33	AD6	A	697	699	Right-handed 310
Helix 34	AD7	A	705	718	Right-handed alpha
Helix 35	AD8	A	718	728	Right-handed alpha
Helix 36	AD9	A	748	752	Right-handed 310
Helix 37	AE1	A	810	813	Right-handed 310
Helix 38	AE2	A	814	822	Right-handed alpha
Helix 39	AE3	A	825	834	Right-handed alpha
Helix 40	AE4	A	844	854	Right-handed alpha
Helix 41	AE5	B	88	94	Right-handed alpha
Helix 42	AE6	B	103	107	Right-handed 310
Helix 43	AE7	B	122	127	Right-handed alpha
Helix 44	AE8	B	132	138	Right-handed alpha
Helix 45	AE9	B	142	146	Right-handed 310
Helix 46	AF1	B	174	179	Right-handed 310
Helix 47	AF2	B	180	185	Right-handed alpha
Helix 48	AF3	B	185	195	Right-handed alpha
Helix 49	AF4	B	208	219	Right-handed alpha
Helix 50	AF5	B	221	226	Right-handed alpha
Helix 51	AF6	B	246	254	Right-handed 310
Helix 52	AF7	B	258	266	Right-handed alpha
Helix 53	AF8	B	280	293	Right-handed alpha
Helix 54	AF9	B	311	318	Right-handed alpha
Helix 55	AG1	B	321	323	Right-handed 310
Helix 56	AG2	B	324	345	Right-handed alpha
Helix 57	AG3	B	373	375	Right-handed 310
Helix 58	AG4	B	378	380	Right-handed 310
Helix 59	AG5	B	403	411	Right-handed alpha
Helix 60	AG6	B	426	428	Right-handed 310
Helix 61	AG7	B	429	433	Right-handed 310
Helix 62	AG8	B	456	460	Right-handed 310
Helix 63	AG9	B	480	484	Right-handed 310
Helix 64	AH1	B	507	516	Right-handed alpha
Helix 65	AH2	B	530	534	Right-handed 310
Helix 66	AH3	B	558	562	Right-handed 310
Helix 67	AH4	B	587	596	Right-handed alpha
Helix 68	AH5	B	645	649	Right-handed 310
Helix 69	AH6	B	659	663	Right-handed 310
Helix 70	AH7	B	665	672	Right-handed alpha
Helix 71	AH8	B	682	686	Right-handed 310
Helix 72	AH9	B	688	696	Right-handed alpha
Helix 73	AI1	B	697	699	Right-handed 310
Helix 74	AI2	B	705	718	Right-handed alpha
Helix 75	AI3	B	718	728	Right-handed alpha
Helix 76	AI4	B	748	752	Right-handed 310
Helix 77	AI5	B	810	813	Right-handed 310
Helix 78	AI6	B	814	822	Right-handed alpha
Helix 79	AI7	B	825	834	Right-handed alpha
Helix 80	AI8	B	844	854	Right-handed alpha

There are 18 sheets in PDB entry 5DLV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	310	first strand
Strand 2	A	165	171	parallel
Strand 3	A	352	357	parallel
Strand 4	A	487	490	anti-parallel
Strand 5	A	196	197	anti-parallel
Strand 6	A	498	499	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	503	504	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	239	241	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	472	473	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	371	first strand
Strand 2	A	452	454	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	385	first strand
Strand 2	A	389	394	anti-parallel
Strand 3	A	443	447	anti-parallel
Strand 4	A	420	424	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	603	first strand
Strand 2	A	835	836	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	613	first strand
Strand 2	A	618	622	anti-parallel
Strand 3	A	627	635	anti-parallel
Strand 4	A	730	737	anti-parallel
Strand 5	A	766	774	anti-parallel
Strand 6	A	788	796	anti-parallel
Strand 7	A	823	824	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	676	679	first strand
Strand 2	A	701	704	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	310	first strand
Strand 2	B	165	171	parallel
Strand 3	B	352	357	parallel
Strand 4	B	487	490	anti-parallel
Strand 5	B	196	197	anti-parallel
Strand 6	B	498	499	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	503	504	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	239	241	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	472	473	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	371	first strand
Strand 2	B	452	454	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	385	first strand
Strand 2	B	389	394	anti-parallel
Strand 3	B	443	447	anti-parallel
Strand 4	B	420	424	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	603	first strand
Strand 2	B	835	836	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	613	first strand
Strand 2	B	618	622	anti-parallel
Strand 3	B	627	635	anti-parallel
Strand 4	B	730	737	anti-parallel
Strand 5	B	766	774	anti-parallel
Strand 6	B	788	796	anti-parallel
Strand 7	B	823	824	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	676	679	first strand
Strand 2	B	701	704	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DLV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DLV