Analysis of interatomic Contacts of Structural Units in PDB entry:
5DLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DLY entry

There is 1 chain in PDB entry 5DLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LYS 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5DLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
10 23Right-handed alpha
Helix 3
AA3
A
23 58Right-handed alpha
Helix 4
AA4
A
72 82Right-handed alpha
Helix 5
AA5
A
93 103Right-handed alpha
Helix 6
AA6
A
113 120Right-handed 310
Helix 7
AA7
A
133 137Right-handed 310
Helix 8
AA8
A
139 150Right-handed alpha
Helix 9
AA9
A
163 165Right-handed 310
Helix 10
AB1
A
166 171Right-handed alpha
Helix 11
AB2
A
172 174Right-handed 310
Helix 12
AB3
A
176 189Right-handed alpha
Helix 13
AB4
A
192 205Right-handed alpha
Helix 14
AB5
A
226 234Right-handed alpha
Helix 15
AB6
A
235 243Right-handed alpha
Helix 16
AB7
A
245 255Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5DLY.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 111first strand
Strand 2
A
86 91parallel
Strand 3
A
63 67parallel
Strand 4
A
125 131parallel
Strand 5
A
151 161parallel
Strand 6
A
259 266anti-parallel
Strand 7
A
210 215anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il