Analysis of interatomic Contacts of Structural Units in PDB entry:
5DM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DM0 entry

There are 2 chains in PDB entry 5DM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LYS 267
B
 ALA -1THR 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5DM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
10 23Right-handed alpha
Helix 3
AA3
A
23 38Right-handed alpha
Helix 4
AA4
A
40 58Right-handed alpha
Helix 5
AA5
A
72 82Right-handed alpha
Helix 6
AA6
A
93 103Right-handed alpha
Helix 7
AA7
A
113 120Right-handed 310
Helix 8
AA8
A
133 137Right-handed 310
Helix 9
AA9
A
139 150Right-handed alpha
Helix 10
AB1
A
166 172Right-handed alpha
Helix 11
AB2
A
176 190Right-handed alpha
Helix 12
AB3
A
192 205Right-handed alpha
Helix 13
AB4
A
226 234Right-handed alpha
Helix 14
AB5
A
235 246Right-handed alpha
Helix 15
AB6
A
247 249Right-handed 310
Helix 16
AB7
A
251 255Right-handed 310
Helix 17
AB8
B
0 10Right-handed alpha
Helix 18
AB9
B
10 23Right-handed alpha
Helix 19
AC1
B
23 38Right-handed alpha
Helix 20
AC2
B
40 58Right-handed alpha
Helix 21
AC3
B
72 80Right-handed alpha
Helix 22
AC4
B
93 103Right-handed alpha
Helix 23
AC5
B
113 120Right-handed 310
Helix 24
AC6
B
133 137Right-handed 310
Helix 25
AC7
B
139 150Right-handed alpha
Helix 26
AC8
B
166 171Right-handed alpha
Helix 27
AC9
B
172 174Right-handed 310
Helix 28
AD1
B
176 189Right-handed alpha
Helix 29
AD2
B
192 207Right-handed alpha
Helix 30
AD3
B
226 234Right-handed alpha
Helix 31
AD4
B
235 244Right-handed alpha
Helix 32
AD5
B
251 255Right-handed 310
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There are 2 sheets in PDB entry 5DM0. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 111first strand
Strand 2
A
86 91parallel
Strand 3
A
63 67parallel
Strand 4
A
125 131parallel
Strand 5
A
151 162parallel
Strand 6
A
258 266anti-parallel
Strand 7
A
210 215anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 111first strand
Strand 2
B
86 91parallel
Strand 3
B
63 67parallel
Strand 4
B
125 131parallel
Strand 5
B
151 162parallel
Strand 6
B
258 266anti-parallel
Strand 7
B
210 215anti-parallel
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