Analysis of interatomic Contacts of Structural Units in PDB entry:
5DM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DM3 entry

There are 4 chains in PDB entry 5DM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	GLU 451
B	ASN 3	GLU 451
C	ALA 6	GLU 451
D	THR 4	LYS 204

There are 84 helices in PDB entry 5DM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	16	Right-handed alpha
Helix 2	AA2	A	40	46	Right-handed alpha
Helix 3	AA3	A	88	91	Right-handed 310
Helix 4	AA4	A	119	133	Right-handed alpha
Helix 5	AA5	A	180	195	Right-handed alpha
Helix 6	AA6	A	221	242	Right-handed alpha
Helix 7	AA7	A	285	298	Right-handed alpha
Helix 8	AA8	A	302	307	Right-handed alpha
Helix 9	AA9	A	309	315	Right-handed 310
Helix 10	AB1	A	359	376	Right-handed alpha
Helix 11	AB2	A	400	410	Right-handed alpha
Helix 12	AB3	A	411	419	Right-handed alpha
Helix 13	AB4	A	419	439	Right-handed alpha
Helix 14	AB5	A	442	450	Right-handed alpha
Helix 15	AB6	B	6	16	Right-handed alpha
Helix 16	AB7	B	40	46	Right-handed alpha
Helix 17	AB8	B	119	134	Right-handed alpha
Helix 18	AB9	B	180	196	Right-handed alpha
Helix 19	AC1	B	221	241	Right-handed alpha
Helix 20	AC2	B	242	244	Right-handed 310
Helix 21	AC3	B	285	298	Right-handed alpha
Helix 22	AC4	B	298	303	Right-handed alpha
Helix 23	AC5	B	304	307	Right-handed 310
Helix 24	AC6	B	309	314	Right-handed alpha
Helix 25	AC7	B	359	377	Right-handed alpha
Helix 26	AC8	B	400	410	Right-handed alpha
Helix 27	AC9	B	411	418	Right-handed alpha
Helix 28	AD1	B	419	439	Right-handed alpha
Helix 29	AD2	B	442	448	Right-handed alpha
Helix 30	AD3	C	7	16	Right-handed alpha
Helix 31	AD4	C	40	46	Right-handed alpha
Helix 32	AD5	C	88	91	Right-handed 310
Helix 33	AD6	C	119	134	Right-handed alpha
Helix 34	AD7	C	152	157	Right-handed alpha
Helix 35	AD8	C	180	196	Right-handed alpha
Helix 36	AD9	C	221	242	Right-handed alpha
Helix 37	AE1	C	285	298	Right-handed alpha
Helix 38	AE2	C	302	307	Right-handed alpha
Helix 39	AE3	C	309	314	Right-handed alpha
Helix 40	AE4	C	315	317	Right-handed 310
Helix 41	AE5	C	359	378	Right-handed alpha
Helix 42	AE6	C	400	410	Right-handed alpha
Helix 43	AE7	C	411	419	Right-handed alpha
Helix 44	AE8	C	419	438	Right-handed alpha
Helix 45	AE9	C	442	449	Right-handed alpha
Helix 46	AF1	D	6	16	Right-handed alpha
Helix 47	AF2	D	40	46	Right-handed alpha
Helix 48	AF3	D	119	134	Right-handed alpha
Helix 49	AF4	D	180	196	Right-handed alpha
Helix 50	AF5	D	221	242	Right-handed alpha
Helix 51	AF6	D	285	299	Right-handed alpha
Helix 52	AF7	D	302	306	Right-handed 310
Helix 53	AF8	D	311	316	Right-handed 310
Helix 54	AF9	D	359	378	Right-handed alpha
Helix 55	AG1	D	400	410	Right-handed alpha
Helix 56	AG2	D	411	419	Right-handed alpha
Helix 57	AG3	D	419	439	Right-handed alpha
Helix 58	AG4	D	442	450	Right-handed alpha
Helix 59	AG5	E	6	16	Right-handed alpha
Helix 60	AG6	E	40	46	Right-handed alpha
Helix 61	AG7	E	119	133	Right-handed alpha
Helix 62	AG8	E	180	196	Right-handed alpha
Helix 63	AG9	E	221	242	Right-handed alpha
Helix 64	AH1	E	285	307	Right-handed alpha
Helix 65	AH2	E	309	316	Right-handed 310
Helix 66	AH3	E	359	377	Right-handed alpha
Helix 67	AH4	E	400	410	Right-handed alpha
Helix 68	AH5	E	411	418	Right-handed alpha
Helix 69	AH6	E	419	439	Right-handed alpha
Helix 70	AH7	E	442	450	Right-handed alpha
Helix 71	AH8	F	6	16	Right-handed alpha
Helix 72	AH9	F	40	46	Right-handed alpha
Helix 73	AI1	F	88	91	Right-handed 310
Helix 74	AI2	F	119	133	Right-handed alpha
Helix 75	AI3	F	180	196	Right-handed alpha
Helix 76	AI4	F	221	242	Right-handed alpha
Helix 77	AI5	F	285	303	Right-handed alpha
Helix 78	AI6	F	304	306	Right-handed 310
Helix 79	AI7	F	309	317	Right-handed 310
Helix 80	AI8	F	359	377	Right-handed alpha
Helix 81	AI9	F	400	410	Right-handed alpha
Helix 82	AJ1	F	411	419	Right-handed alpha
Helix 83	AJ2	F	419	438	Right-handed alpha
Helix 84	AJ3	F	442	450	Right-handed alpha

There are 22 sheets in PDB entry 5DM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	86	first strand
Strand 2	A	100	107	anti-parallel
Strand 3	A	92	93	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	100	107	anti-parallel
Strand 3	A	21	27	parallel
Strand 4	A	33	39	anti-parallel
Strand 5	C	200	205	anti-parallel
Strand 6	C	211	216	anti-parallel
Strand 7	C	137	148	anti-parallel
Strand 8	C	219	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	137	148	anti-parallel
Strand 3	C	246	247	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	137	148	anti-parallel
Strand 3	C	261	268	anti-parallel
Strand 4	C	348	351	anti-parallel
Strand 5	C	335	340	anti-parallel
Strand 6	C	325	329	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	335	340	parallel
Strand 3	A	348	351	anti-parallel
Strand 4	A	261	269	anti-parallel
Strand 5	A	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	A	261	269	anti-parallel
Strand 3	A	137	148	anti-parallel
Strand 4	A	219	220	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	137	148	anti-parallel
Strand 3	A	211	216	anti-parallel
Strand 4	A	200	205	anti-parallel
Strand 5	D	33	39	anti-parallel
Strand 6	D	21	27	anti-parallel
Strand 7	D	100	108	parallel
Strand 8	D	92	93	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	100	108	anti-parallel
Strand 3	D	92	93	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	83	93	anti-parallel
Strand 3	B	100	108	anti-parallel
Strand 4	B	21	27	parallel
Strand 5	B	33	39	anti-parallel
Strand 6	F	200	205	anti-parallel
Strand 7	F	211	216	anti-parallel
Strand 8	F	137	148	anti-parallel
Strand 9	F	219	220	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	246	247	first strand
Strand 2	F	137	148	anti-parallel
Strand 3	F	261	269	anti-parallel
Strand 4	F	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	273	first strand
Strand 2	F	261	269	anti-parallel
Strand 3	F	348	351	anti-parallel
Strand 4	F	335	340	anti-parallel
Strand 5	F	325	329	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	329	first strand
Strand 2	B	335	340	parallel
Strand 3	B	348	351	anti-parallel
Strand 4	B	261	269	anti-parallel
Strand 5	B	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	273	first strand
Strand 2	B	261	269	anti-parallel
Strand 3	B	137	149	anti-parallel
Strand 4	B	219	220	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	247	first strand
Strand 2	B	137	149	anti-parallel
Strand 3	B	211	216	anti-parallel
Strand 4	B	200	205	anti-parallel
Strand 5	C	33	39	anti-parallel
Strand 6	C	21	27	anti-parallel
Strand 7	C	100	108	parallel
Strand 8	C	83	86	anti-parallel
Strand 9	C	51	52	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	100	108	anti-parallel
Strand 3	C	83	86	anti-parallel
Strand 4	C	51	52	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	329	first strand
Strand 2	D	335	340	parallel
Strand 3	D	348	351	anti-parallel
Strand 4	D	261	269	anti-parallel
Strand 5	D	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	273	first strand
Strand 2	D	261	269	anti-parallel
Strand 3	D	137	149	anti-parallel
Strand 4	D	219	220	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	247	first strand
Strand 2	D	137	149	anti-parallel
Strand 3	D	211	216	anti-parallel
Strand 4	D	200	205	anti-parallel
Strand 5	E	33	39	anti-parallel
Strand 6	E	21	27	anti-parallel
Strand 7	E	100	108	parallel
Strand 8	E	83	93	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	329	first strand
Strand 2	E	335	339	parallel
Strand 3	E	349	351	anti-parallel
Strand 4	E	261	269	anti-parallel
Strand 5	E	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	272	273	first strand
Strand 2	E	261	269	anti-parallel
Strand 3	E	136	149	anti-parallel
Strand 4	E	219	220	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	247	first strand
Strand 2	E	136	149	anti-parallel
Strand 3	E	211	216	anti-parallel
Strand 4	E	200	205	anti-parallel
Strand 5	F	33	39	anti-parallel
Strand 6	F	21	27	anti-parallel
Strand 7	F	100	107	parallel
Strand 8	F	83	86	anti-parallel
Strand 9	F	51	52	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	52	first strand
Strand 2	F	83	86	anti-parallel
Strand 3	F	100	107	anti-parallel
Strand 4	F	92	93	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DM3