Analysis of interatomic Contacts of Structural Units in PDB entry:
5DMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DMH entry

There are 2 chains in PDB entry 5DMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9HIS 432
B
 ARG 9ASN 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5DMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 32Right-handed alpha
Helix 2
AA2
A
67 85Right-handed alpha
Helix 3
AA3
A
105 118Right-handed alpha
Helix 4
AA4
A
128 131Right-handed 310
Helix 5
AA5
A
148 150Right-handed 310
Helix 6
AA6
A
151 155Right-handed 310
Helix 7
AA7
A
164 172Right-handed alpha
Helix 8
AA8
A
181 186Right-handed alpha
Helix 9
AA9
A
188 202Right-handed alpha
Helix 10
AB1
A
213 224Right-handed alpha
Helix 11
AB2
A
234 238Right-handed 310
Helix 12
AB3
A
239 247Right-handed alpha
Helix 13
AB4
A
274 287Right-handed alpha
Helix 14
AB5
A
295 301Right-handed alpha
Helix 15
AB6
A
304 315Right-handed alpha
Helix 16
AB7
A
327 339Right-handed alpha
Helix 17
AB8
A
339 361Right-handed alpha
Helix 18
AB9
A
370 382Right-handed alpha
Helix 19
AC1
A
420 430Right-handed alpha
Helix 20
AC2
B
18 32Right-handed alpha
Helix 21
AC3
B
67 85Right-handed alpha
Helix 22
AC4
B
105 117Right-handed alpha
Helix 23
AC5
B
128 131Right-handed 310
Helix 24
AC6
B
148 150Right-handed 310
Helix 25
AC7
B
151 155Right-handed 310
Helix 26
AC8
B
164 172Right-handed alpha
Helix 27
AC9
B
181 187Right-handed alpha
Helix 28
AD1
B
188 202Right-handed alpha
Helix 29
AD2
B
213 224Right-handed alpha
Helix 30
AD3
B
234 238Right-handed 310
Helix 31
AD4
B
239 247Right-handed alpha
Helix 32
AD5
B
274 287Right-handed alpha
Helix 33
AD6
B
295 301Right-handed alpha
Helix 34
AD7
B
304 315Right-handed alpha
Helix 35
AD8
B
327 338Right-handed alpha
Helix 36
AD9
B
339 362Right-handed alpha
Helix 37
AE1
B
370 381Right-handed alpha
Helix 38
AE2
B
420 430Right-handed alpha
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There are 4 sheets in PDB entry 5DMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
206 209parallel
Strand 3
A
122 125parallel
Strand 4
A
229 232parallel
Strand 5
A
89 93parallel
Strand 6
A
12 16parallel
Strand 7
A
56 60parallel
Strand 8
A
36 40parallel
Strand 9
A
385 393anti-parallel
Strand 10
A
396 401anti-parallel
Strand 11
A
408 412anti-parallel
Strand 12
A
365 369parallel
Strand 13
A
266 270parallel
Strand 14
A
321 323parallel
Strand 15
A
291 293parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
139 142anti-parallel
Strand 3
A
145 146anti-parallel
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There are 15 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
206 209parallel
Strand 3
B
122 125parallel
Strand 4
B
229 232parallel
Strand 5
B
89 93parallel
Strand 6
B
12 16parallel
Strand 7
B
56 60parallel
Strand 8
B
36 40parallel
Strand 9
B
385 393anti-parallel
Strand 10
B
396 401anti-parallel
Strand 11
B
408 412anti-parallel
Strand 12
B
365 369parallel
Strand 13
B
266 271parallel
Strand 14
B
321 324parallel
Strand 15
B
291 293parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
139 142anti-parallel
Strand 3
B
145 146anti-parallel
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