Analysis of interatomic Contacts of Structural Units in PDB entry:
5DML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DML entry

There is 1 chain in PDB entry 5DML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4SER 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5DML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
23 30Right-handed alpha
Helix 3
AA3
A
38 47Right-handed alpha
Helix 4
AA4
A
47 62Right-handed alpha
Helix 5
AA5
A
74 79Right-handed alpha
Helix 6
AA6
A
80 82Right-handed 310
Helix 7
AA7
A
84 110Right-handed alpha
Helix 8
AA8
A
124 129Right-handed alpha
Helix 9
AA9
A
132 136Right-handed 310
Helix 10
AB1
A
142 160Right-handed alpha
Helix 11
AB2
A
172 183Right-handed alpha
Helix 12
AB3
A
184 186Right-handed 310
Helix 13
AB4
A
208 218Right-handed alpha
Helix 14
AB5
A
231 233Right-handed 310
Helix 15
AB6
A
234 243Right-handed alpha
Helix 16
AB7
A
276 279Right-handed 310
Helix 17
AB8
A
280 287Right-handed alpha
Helix 18
AB9
A
299 309Right-handed alpha
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There are 2 sheets in PDB entry 5DML. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
289 292parallel
Strand 3
A
250 253parallel
Strand 4
A
222 228parallel
Strand 5
A
191 195parallel
Strand 6
A
164 170parallel
Strand 7
A
117 122parallel
Strand 8
A
65 67parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
202 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il