Analysis of interatomic Contacts of Structural Units in PDB entry:
5DMN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DMN entry

There are 2 chains in PDB entry 5DMN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5SER 310
B
 ASN 5SER 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5DMN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
23 30Right-handed alpha
Helix 3
AA3
A
42 47Right-handed alpha
Helix 4
AA4
A
47 62Right-handed alpha
Helix 5
AA5
A
84 110Right-handed alpha
Helix 6
AA6
A
111 114Right-handed 310
Helix 7
AA7
A
142 161Right-handed alpha
Helix 8
AA8
A
172 184Right-handed alpha
Helix 9
AA9
A
208 217Right-handed alpha
Helix 10
AB1
A
231 233Right-handed 310
Helix 11
AB2
A
234 244Right-handed alpha
Helix 12
AB3
A
280 287Right-handed alpha
Helix 13
AB4
A
299 309Right-handed alpha
Helix 14
AB5
B
7 12Right-handed alpha
Helix 15
AB6
B
23 30Right-handed alpha
Helix 16
AB7
B
42 47Right-handed alpha
Helix 17
AB8
B
47 62Right-handed alpha
Helix 18
AB9
B
84 110Right-handed alpha
Helix 19
AC1
B
111 114Right-handed 310
Helix 20
AC2
B
142 161Right-handed alpha
Helix 21
AC3
B
172 185Right-handed alpha
Helix 22
AC4
B
208 217Right-handed alpha
Helix 23
AC5
B
231 233Right-handed 310
Helix 24
AC6
B
234 244Right-handed alpha
Helix 25
AC7
B
280 287Right-handed alpha
Helix 26
AC8
B
299 310Right-handed alpha
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There are 2 sheets in PDB entry 5DMN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
289 292parallel
Strand 3
A
250 253parallel
Strand 4
A
222 228parallel
Strand 5
A
191 195parallel
Strand 6
A
164 170parallel
Strand 7
A
117 122parallel
Strand 8
A
65 67parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
289 292parallel
Strand 3
B
250 253parallel
Strand 4
B
222 228parallel
Strand 5
B
191 195parallel
Strand 6
B
164 170parallel
Strand 7
B
117 122parallel
Strand 8
B
65 66parallel
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