Analysis of interatomic Contacts of Structural Units in PDB entry:
5DMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DMP entry

There is 1 chain in PDB entry 5DMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 30GLY 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5DMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 89Right-handed 310
Helix 2
AA2
A
115 117Right-handed 310
Helix 3
AA3
A
125 133Right-handed alpha
Helix 4
AA4
A
176 181Right-handed alpha
Helix 5
AA5
A
190 198Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5DMP.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
101 113anti-parallel
Strand 3
A
134 140anti-parallel
Strand 4
A
145 152anti-parallel
Strand 5
A
161 165anti-parallel
Strand 6
A
74 82anti-parallel
Strand 7
A
56 62anti-parallel
Strand 8
A
45 53anti-parallel
Strand 9
A
34 41anti-parallel
Strand 10
A
101 113anti-parallel
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