Analysis of interatomic Contacts of Structural Units in PDB entry:
5DMQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DMQ entry

There are 2 chains in PDB entry 5DMQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 24	GLU 663
B	PRO 5	GLN 420

There are 33 helices in PDB entry 5DMQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	29	Right-handed alpha
Helix 2	AA2	A	67	84	Right-handed alpha
Helix 3	AA3	A	115	122	Right-handed alpha
Helix 4	AA4	A	131	137	Right-handed alpha
Helix 5	AA5	A	154	158	Right-handed 310
Helix 6	AA6	A	164	169	Right-handed 310
Helix 7	AA7	A	194	214	Right-handed alpha
Helix 8	AA8	A	232	251	Right-handed alpha
Helix 9	AA9	A	281	290	Right-handed alpha
Helix 10	AB1	A	296	308	Right-handed alpha
Helix 11	AB2	A	309	311	Right-handed 310
Helix 12	AB3	A	316	321	Right-handed alpha
Helix 13	AB4	A	322	328	Right-handed 310
Helix 14	AB5	A	337	353	Right-handed alpha
Helix 15	AB6	A	400	405	Right-handed alpha
Helix 16	AB7	A	407	428	Right-handed alpha
Helix 17	AB8	A	456	466	Right-handed alpha
Helix 18	AB9	A	559	572	Right-handed alpha
Helix 19	AC1	A	584	592	Right-handed alpha
Helix 20	AC2	A	613	624	Right-handed alpha
Helix 21	AC3	A	645	659	Right-handed alpha
Helix 22	AC4	B	9	27	Right-handed alpha
Helix 23	AC5	B	44	59	Right-handed alpha
Helix 24	AC6	B	64	84	Right-handed alpha
Helix 25	AC7	B	133	138	Right-handed alpha
Helix 26	AC8	B	190	213	Right-handed alpha
Helix 27	AC9	B	231	239	Right-handed alpha
Helix 28	AD1	B	260	271	Right-handed alpha
Helix 29	AD2	B	271	277	Right-handed alpha
Helix 30	AD3	B	277	296	Right-handed alpha
Helix 31	AD4	B	304	314	Right-handed alpha
Helix 32	AD5	B	373	382	Right-handed alpha
Helix 33	AD6	B	396	407	Right-handed alpha

There are 13 sheets in PDB entry 5DMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	181	185	anti-parallel
Strand 3	A	170	172	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	110	112	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	222	first strand
Strand 2	A	225	229	anti-parallel
Strand 3	A	146	150	anti-parallel
Strand 4	A	260	263	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	271	274	anti-parallel
Strand 3	A	277	280	anti-parallel
Strand 4	A	357	358	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	373	first strand
Strand 2	A	376	385	anti-parallel
Strand 3	A	388	393	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	373	first strand
Strand 2	A	376	385	anti-parallel
Strand 3	A	396	398	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	433	first strand
Strand 2	A	470	471	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	551	first strand
Strand 2	A	537	541	anti-parallel
Strand 3	A	520	526	anti-parallel
Strand 4	A	579	582	parallel
Strand 5	A	631	633	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	93	102	anti-parallel
Strand 3	B	112	114	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	109	first strand
Strand 2	B	93	102	anti-parallel
Strand 3	B	34	35	anti-parallel
Strand 4	B	127	128	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	173	first strand
Strand 2	B	155	161	anti-parallel
Strand 3	B	146	151	anti-parallel
Strand 4	B	223	228	parallel
Strand 5	B	250	255	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	303	first strand
Strand 2	B	409	412	anti-parallel
Strand 3	B	319	323	anti-parallel
Strand 4	B	388	392	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	341	342	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DMQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DMQ