Analysis of interatomic Contacts of Structural Units in PDB entry:
5DMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DMZ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5DMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 735THR 968
A
 GLY 970SER 1083
B
 ASN 735THR 968
B
 GLY 970MET 1027
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5DMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
743 753Right-handed alpha
Helix 2
AA2
A
757 761Right-handed 310
Helix 3
AA3
A
827 841Right-handed alpha
Helix 4
AA4
A
842 849Right-handed 310
Helix 5
AA5
A
873 884Right-handed alpha
Helix 6
AA6
A
890 911Right-handed alpha
Helix 7
AA7
A
919 921Right-handed 310
Helix 8
AA8
A
926 931Right-handed alpha
Helix 9
AA9
A
973 978Right-handed alpha
Helix 10
AB1
A
984 1001Right-handed alpha
Helix 11
AB2
A
1024 1037Right-handed alpha
Helix 12
AB3
A
1046 1062Right-handed alpha
Helix 13
AB4
A
1065 1083Right-handed alpha
Helix 14
AB5
B
743 753Right-handed alpha
Helix 15
AB6
B
757 761Right-handed 310
Helix 16
AB7
B
827 841Right-handed alpha
Helix 17
AB8
B
842 849Right-handed 310
Helix 18
AB9
B
873 884Right-handed alpha
Helix 19
AC1
B
890 911Right-handed alpha
Helix 20
AC2
B
926 932Right-handed alpha
Helix 21
AC3
B
973 978Right-handed alpha
Helix 22
AC4
B
984 1001Right-handed alpha
Helix 23
AC5
B
1024 1037Right-handed alpha
Helix 24
AC6
B
1040 1044Right-handed 310
Helix 25
AC7
B
1046 1062Right-handed alpha
Helix 26
AC8
B
1065 1082Right-handed alpha
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There are 10 sheets in PDB entry 5DMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 738first strand
Strand 2
A
961 962parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 766first strand
Strand 2
A
852 857parallel
Strand 3
A
862 866anti-parallel
Strand 4
A
818 823anti-parallel
Strand 5
A
800 805anti-parallel
Strand 6
A
786 795anti-parallel
Strand 7
A
778 781anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
913 914first strand
Strand 2
A
951 952anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
923 924first strand
Strand 2
A
943 944anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1006 1009first strand
Strand 2
A
1012 1015anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
736 738first strand
Strand 2
B
960 962parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
764 767first strand
Strand 2
B
852 858parallel
Strand 3
B
862 866anti-parallel
Strand 4
B
818 823anti-parallel
Strand 5
B
799 805anti-parallel
Strand 6
B
785 795anti-parallel
Strand 7
B
779 782anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
913 914first strand
Strand 2
B
951 952anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
923 924first strand
Strand 2
B
943 944anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1006 1009first strand
Strand 2
B
1012 1015anti-parallel
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