Analysis of interatomic Contacts of Structural Units in PDB entry:
5DN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DN5 entry

There are 3 chains in PDB entry 5DN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 151SER 301
B
 ASP 151SER 301
C
 SER 152SER 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5DN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 171Right-handed alpha
Helix 2
AA2
A
173 185Right-handed alpha
Helix 3
AA3
A
241 255Right-handed alpha
Helix 4
AA4
A
256 260Right-handed 310
Helix 5
AA5
A
267 278Right-handed alpha
Helix 6
AA6
A
279 283Right-handed 310
Helix 7
AA7
A
285 301Right-handed alpha
Helix 8
AA8
B
152 171Right-handed alpha
Helix 9
AA9
B
173 186Right-handed alpha
Helix 10
AB1
B
241 256Right-handed alpha
Helix 11
AB2
B
259 264Right-handed alpha
Helix 12
AB3
B
268 277Right-handed alpha
Helix 13
AB4
B
283 299Right-handed alpha
Helix 14
AB5
C
154 171Right-handed alpha
Helix 15
AB6
C
173 186Right-handed alpha
Helix 16
AB7
C
241 254Right-handed alpha
Helix 17
AB8
C
256 258Right-handed 310
Helix 18
AB9
C
259 264Right-handed alpha
Helix 19
AC1
C
268 277Right-handed alpha
Helix 20
AC2
C
289 300Right-handed alpha
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There are 3 sheets in PDB entry 5DN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 225first strand
Strand 2
A
228 237anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 225first strand
Strand 2
B
228 237anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 225first strand
Strand 2
C
228 237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il