Analysis of interatomic Contacts of Structural Units in PDB entry:
5DN6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DN6 entry

There are 29 chains in PDB entry 5DN6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	UNK 1001	UNK 1020
2	UNK 1001	UNK 1015
3	UNK 1001	UNK 1019
A	GLY 2	ALA 511
B	GLU 7	ALA 511
C	VAL 28	ALA 511
D	ALA 2	ALA 471
E	GLU 3	ARG 468
F	ALA 4	LEU 469
G	SER 3	LEU 290
H	SER 5	GLU 114
I	VAL 9	GLY 83
J	ASN 3	ALA 76
K	ASN 3	ALA 76
L	ASN 3	ALA 76
M	ASN 3	ALA 76
N	ASN 3	ALA 76
O	ASN 3	ALA 76
P	ASN 3	ALA 76
Q	ASN 3	ALA 76
R	ASN 3	ALA 76
S	ASN 3	ALA 76
T	ASN 3	ALA 76
U	ASN 3	ALA 76
V	UNK 1001	UNK 1078
W	UNK 1001	UNK 1124
X	UNK 1001	PRO 1281
Y	UNK 1001	UNK 1054
Z	THR 1	ILE 103

There are176 helices in PDB entry 5DN6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	1002	1012	Right-handed alpha
Helix 2	AA2	2	1002	1015	Right-handed alpha
Helix 3	AA3	3	1002	1019	Right-handed alpha
Helix 4	AA4	A	8	18	Right-handed alpha
Helix 5	AA5	A	78	82	Right-handed 310
Helix 6	AA6	A	100	104	Right-handed 310
Helix 7	AA7	A	150	157	Right-handed alpha
Helix 8	AA8	A	171	173	Right-handed 310
Helix 9	AA9	A	174	187	Right-handed alpha
Helix 10	AB1	A	210	224	Right-handed alpha
Helix 11	AB2	A	226	228	Right-handed 310
Helix 12	AB3	A	240	261	Right-handed alpha
Helix 13	AB4	A	271	287	Right-handed alpha
Helix 14	AB5	A	291	295	Right-handed 310
Helix 15	AB6	A	298	309	Right-handed alpha
Helix 16	AB7	A	337	347	Right-handed alpha
Helix 17	AB8	A	354	361	Right-handed alpha
Helix 18	AB9	A	375	380	Right-handed 310
Helix 19	AC1	A	381	402	Right-handed alpha
Helix 20	AC2	A	412	428	Right-handed alpha
Helix 21	AC3	A	438	451	Right-handed alpha
Helix 22	AC4	A	458	460	Right-handed 310
Helix 23	AC5	A	461	477	Right-handed alpha
Helix 24	AC6	A	477	488	Right-handed alpha
Helix 25	AC7	A	492	511	Right-handed alpha
Helix 26	AC8	B	11	18	Right-handed alpha
Helix 27	AC9	B	78	82	Right-handed 310
Helix 28	AD1	B	100	104	Right-handed 310
Helix 29	AD2	B	150	157	Right-handed alpha
Helix 30	AD3	B	174	186	Right-handed alpha
Helix 31	AD4	B	186	191	Right-handed alpha
Helix 32	AD5	B	210	224	Right-handed alpha
Helix 33	AD6	B	226	228	Right-handed 310
Helix 34	AD7	B	240	260	Right-handed alpha
Helix 35	AD8	B	271	286	Right-handed alpha
Helix 36	AD9	B	291	295	Right-handed 310
Helix 37	AE1	B	298	309	Right-handed alpha
Helix 38	AE2	B	314	318	Right-handed 310
Helix 39	AE3	B	337	345	Right-handed alpha
Helix 40	AE4	B	354	360	Right-handed alpha
Helix 41	AE5	B	374	379	Right-handed alpha
Helix 42	AE6	B	381	402	Right-handed alpha
Helix 43	AE7	B	403	405	Right-handed 310
Helix 44	AE8	B	413	429	Right-handed alpha
Helix 45	AE9	B	438	451	Right-handed alpha
Helix 46	AF1	B	458	460	Right-handed 310
Helix 47	AF2	B	461	477	Right-handed alpha
Helix 48	AF3	B	477	488	Right-handed alpha
Helix 49	AF4	B	492	511	Right-handed alpha
Helix 50	AF5	C	78	82	Right-handed 310
Helix 51	AF6	C	100	104	Right-handed 310
Helix 52	AF7	C	150	157	Right-handed alpha
Helix 53	AF8	C	174	186	Right-handed alpha
Helix 54	AF9	C	187	189	Right-handed 310
Helix 55	AG1	C	210	224	Right-handed alpha
Helix 56	AG2	C	226	228	Right-handed 310
Helix 57	AG3	C	240	261	Right-handed alpha
Helix 58	AG4	C	271	286	Right-handed alpha
Helix 59	AG5	C	291	295	Right-handed 310
Helix 60	AG6	C	298	307	Right-handed alpha
Helix 61	AG7	C	314	318	Right-handed 310
Helix 62	AG8	C	337	345	Right-handed alpha
Helix 63	AG9	C	354	361	Right-handed alpha
Helix 64	AH1	C	375	380	Right-handed 310
Helix 65	AH2	C	381	389	Right-handed alpha
Helix 66	AH3	C	390	406	Right-handed alpha
Helix 67	AH4	C	412	430	Right-handed alpha
Helix 68	AH5	C	438	451	Right-handed alpha
Helix 69	AH6	C	458	460	Right-handed 310
Helix 70	AH7	C	461	477	Right-handed alpha
Helix 71	AH8	C	477	488	Right-handed alpha
Helix 72	AH9	C	492	511	Right-handed alpha
Helix 73	AI1	D	82	86	Right-handed 310
Helix 74	AI2	D	117	121	Right-handed 310
Helix 75	AI3	D	132	139	Right-handed alpha
Helix 76	AI4	D	156	169	Right-handed alpha
Helix 77	AI5	D	184	198	Right-handed alpha
Helix 78	AI6	D	221	244	Right-handed alpha
Helix 79	AI7	D	254	266	Right-handed alpha
Helix 80	AI8	D	273	277	Right-handed 310
Helix 81	AI9	D	280	290	Right-handed alpha
Helix 82	AJ1	D	309	312	Right-handed 310
Helix 83	AJ2	D	315	322	Right-handed alpha
Helix 84	AJ3	D	323	325	Right-handed 310
Helix 85	AJ4	D	332	337	Right-handed alpha
Helix 86	AJ5	D	355	388	Right-handed alpha
Helix 87	AJ6	D	395	410	Right-handed alpha
Helix 88	AJ7	D	417	422	Right-handed alpha
Helix 89	AJ8	D	429	443	Right-handed alpha
Helix 90	AJ9	D	449	454	Right-handed alpha
Helix 91	AK1	D	458	471	Right-handed alpha
Helix 92	AK2	E	82	86	Right-handed 310
Helix 93	AK3	E	132	139	Right-handed alpha
Helix 94	AK4	E	156	173	Right-handed alpha
Helix 95	AK5	E	184	199	Right-handed alpha
Helix 96	AK6	E	221	244	Right-handed alpha
Helix 97	AK7	E	253	268	Right-handed alpha
Helix 98	AK8	E	280	290	Right-handed alpha
Helix 99	AK9	E	308	312	Right-handed 310
Helix 100	AL1	E	315	323	Right-handed alpha
Helix 101	AL2	E	332	337	Right-handed alpha
Helix 102	AL3	E	355	360	Right-handed alpha
Helix 103	AL4	E	360	387	Right-handed alpha
Helix 104	AL5	E	393	410	Right-handed alpha
Helix 105	AL6	E	417	422	Right-handed alpha
Helix 106	AL7	E	429	443	Right-handed alpha
Helix 107	AL8	E	449	453	Right-handed 310
Helix 108	AL9	E	458	468	Right-handed alpha
Helix 109	AM1	F	82	86	Right-handed 310
Helix 110	AM2	F	117	121	Right-handed 310
Helix 111	AM3	F	132	139	Right-handed alpha
Helix 112	AM4	F	156	168	Right-handed alpha
Helix 113	AM5	F	184	198	Right-handed alpha
Helix 114	AM6	F	221	242	Right-handed alpha
Helix 115	AM7	F	254	266	Right-handed alpha
Helix 116	AM8	F	273	277	Right-handed 310
Helix 117	AM9	F	280	290	Right-handed alpha
Helix 118	AN1	F	309	312	Right-handed 310
Helix 119	AN2	F	315	322	Right-handed alpha
Helix 120	AN3	F	323	325	Right-handed 310
Helix 121	AN4	F	332	338	Right-handed alpha
Helix 122	AN5	F	355	360	Right-handed alpha
Helix 123	AN6	F	360	387	Right-handed alpha
Helix 124	AN7	F	388	392	Right-handed 310
Helix 125	AN8	F	395	410	Right-handed alpha
Helix 126	AN9	F	417	422	Right-handed alpha
Helix 127	AO1	F	429	443	Right-handed alpha
Helix 128	AO2	F	449	454	Right-handed 310
Helix 129	AO3	F	458	469	Right-handed alpha
Helix 130	AO4	G	4	59	Right-handed alpha
Helix 131	AO5	G	68	72	Right-handed 310
Helix 132	AO6	G	93	110	Right-handed alpha
Helix 133	AO7	G	122	134	Right-handed alpha
Helix 134	AO8	G	151	166	Right-handed alpha
Helix 135	AO9	G	214	289	Right-handed alpha
Helix 136	AP1	H	7	28	Right-handed alpha
Helix 137	AP2	H	29	45	Right-handed alpha
Helix 138	AP3	H	46	55	Right-handed alpha
Helix 139	AP4	H	60	72	Right-handed alpha
Helix 140	AP5	H	78	91	Right-handed alpha
Helix 141	AP6	H	96	112	Right-handed alpha
Helix 142	AP7	J	4	41	Right-handed alpha
Helix 143	AP8	J	44	75	Right-handed alpha
Helix 144	AP9	K	4	41	Right-handed alpha
Helix 145	AQ1	K	44	75	Right-handed alpha
Helix 146	AQ2	L	4	41	Right-handed alpha
Helix 147	AQ3	L	44	75	Right-handed alpha
Helix 148	AQ4	M	4	41	Right-handed alpha
Helix 149	AQ5	M	44	75	Right-handed alpha
Helix 150	AQ6	N	4	41	Right-handed alpha
Helix 151	AQ7	N	44	75	Right-handed alpha
Helix 152	AQ8	O	4	41	Right-handed alpha
Helix 153	AQ9	O	44	75	Right-handed alpha
Helix 154	AR1	P	4	41	Right-handed alpha
Helix 155	AR2	P	44	75	Right-handed alpha
Helix 156	AR3	Q	4	41	Right-handed alpha
Helix 157	AR4	Q	44	75	Right-handed alpha
Helix 158	AR5	R	4	41	Right-handed alpha
Helix 159	AR6	R	44	75	Right-handed alpha
Helix 160	AR7	S	4	41	Right-handed alpha
Helix 161	AR8	S	44	75	Right-handed alpha
Helix 162	AR9	T	4	41	Right-handed alpha
Helix 163	AS1	T	44	75	Right-handed alpha
Helix 164	AS2	U	4	41	Right-handed alpha
Helix 165	AS3	U	44	75	Right-handed alpha
Helix 166	AS4	V	1002	1078	Right-handed alpha
Helix 167	AS5	W	1002	1102	Right-handed alpha
Helix 168	AS6	W	1105	1123	Right-handed alpha
Helix 169	AS7	X	1002	1018	Right-handed alpha
Helix 170	AS8	X	1022	1035	Right-handed alpha
Helix 171	AS9	X	1203	1233	Right-handed alpha
Helix 172	AT1	X	1253	1280	Right-handed alpha
Helix 173	AT2	Y	1002	1025	Right-handed alpha
Helix 174	AT3	Y	1027	1053	Right-handed alpha
Helix 175	AT4	Z	3	30	Right-handed alpha
Helix 176	AT5	Z	83	100	Right-handed alpha

There are 24 sheets in PDB entry 5DN6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	28	35	anti-parallel
Strand 3	A	38	43	anti-parallel
Strand 4	A	70	76	anti-parallel
Strand 5	A	60	67	anti-parallel
Strand 6	A	52	55	anti-parallel
Strand 7	A	88	93	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	125	128	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	230	235	parallel
Strand 3	A	201	207	parallel
Strand 4	A	264	270	parallel
Strand 5	A	321	326	parallel

Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	353	first strand
Strand 2	A	165	169	parallel
Strand 3	A	327	329	parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	70	76	anti-parallel
Strand 4	B	60	67	anti-parallel
Strand 5	B	52	55	anti-parallel
Strand 6	B	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	125	128	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	353	first strand
Strand 2	B	166	169	parallel
Strand 3	B	327	329	parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	235	first strand
Strand 2	B	201	207	parallel
Strand 3	B	264	270	parallel
Strand 4	B	321	326	parallel

Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	35	first strand
Strand 2	C	38	43	anti-parallel
Strand 3	C	71	75	anti-parallel
Strand 4	C	60	66	anti-parallel
Strand 5	C	52	55	anti-parallel
Strand 6	C	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	126	128	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	353	first strand
Strand 2	C	166	170	parallel
Strand 3	C	327	330	parallel

Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	235	first strand
Strand 2	C	201	207	parallel
Strand 3	C	264	270	parallel
Strand 4	C	321	326	parallel

Back to list of sheets
Back to top of page

There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	69	72	anti-parallel
Strand 3	D	30	33	anti-parallel
Strand 4	D	40	47	anti-parallel
Strand 5	D	52	57	anti-parallel
Strand 6	D	15	19	anti-parallel
Strand 7	D	7	12	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	107	110	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	330	first strand
Strand 2	D	146	151	parallel
Strand 3	D	300	307	parallel
Strand 4	D	247	252	parallel
Strand 5	D	175	181	parallel
Strand 6	D	211	216	parallel

Back to list of sheets
Back to top of page

There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	69	72	anti-parallel
Strand 3	E	30	33	anti-parallel
Strand 4	E	40	47	anti-parallel
Strand 5	E	52	57	anti-parallel
Strand 6	E	15	20	anti-parallel
Strand 7	E	6	12	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	81	first strand
Strand 2	E	107	110	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	217	first strand
Strand 2	E	176	183	parallel
Strand 3	E	246	252	parallel
Strand 4	E	299	305	parallel
Strand 5	E	146	150	parallel
Strand 6	E	325	330	parallel

Back to list of sheets
Back to top of page

There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	69	72	anti-parallel
Strand 3	F	30	33	anti-parallel
Strand 4	F	40	47	anti-parallel
Strand 5	F	52	57	anti-parallel
Strand 6	F	15	20	anti-parallel
Strand 7	F	6	12	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	81	first strand
Strand 2	F	107	110	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	327	330	first strand
Strand 2	F	146	151	parallel
Strand 3	F	299	307	parallel
Strand 4	F	246	252	parallel
Strand 5	F	175	181	parallel
Strand 6	F	211	216	parallel

Back to list of sheets
Back to top of page

There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	186	194	first strand
Strand 2	G	173	180	anti-parallel
Strand 3	G	80	84	parallel
Strand 4	G	117	121	parallel
Strand 5	G	136	140	parallel

Back to list of sheets
Back to top of page

There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	31	35	first strand
Strand 2	I	20	26	anti-parallel
Strand 3	I	48	54	anti-parallel
Strand 4	I	59	64	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	41	45	first strand
Strand 2	I	67	71	anti-parallel
Strand 3	I	76	80	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DN6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DN6