Analysis of interatomic Contacts of Structural Units in PDB entry:
5DN7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DN7 entry

There is 1 chain in PDB entry 5DN7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 345SER 594
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5DN7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
345 349Right-handed 310
Helix 2
AA2
A
351 360Right-handed alpha
Helix 3
AA3
A
367 380Right-handed alpha
Helix 4
AA4
A
381 386Right-handed 310
Helix 5
AA5
A
387 402Right-handed alpha
Helix 6
AA6
A
406 425Right-handed alpha
Helix 7
AA7
A
426 430Right-handed 310
Helix 8
AA8
A
431 442Right-handed alpha
Helix 9
AA9
A
443 445Right-handed 310
Helix 10
AB1
A
447 466Right-handed alpha
Helix 11
AB2
A
466 476Right-handed alpha
Helix 12
AB3
A
477 480Right-handed 310
Helix 13
AB4
A
482 500Right-handed alpha
Helix 14
AB5
A
501 505Right-handed 310
Helix 15
AB6
A
506 515Right-handed alpha
Helix 16
AB7
A
516 520Right-handed 310
Helix 17
AB8
A
522 541Right-handed alpha
Helix 18
AB9
A
542 544Right-handed 310
Helix 19
AC1
A
545 554Right-handed alpha
Helix 20
AC2
A
564 574Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5DN7.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 580first strand
Strand 2
A
586 587anti-parallel
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