Analysis of interatomic Contacts of Structural Units in PDB entry:
5DN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DN8 entry

There is 1 chain in PDB entry 5DN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0PRO 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5DN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 23Right-handed alpha
Helix 2
AA2
A
58 60Right-handed 310
Helix 3
AA3
A
74 83Right-handed alpha
Helix 4
AA4
A
97 110Right-handed alpha
Helix 5
AA5
A
125 131Right-handed alpha
Helix 6
AA6
A
132 137Right-handed 310
Helix 7
AA7
A
151 162Right-handed alpha
Helix 8
AA8
A
187 196Right-handed alpha
Helix 9
AA9
A
232 240Right-handed alpha
Helix 10
AB1
A
247 258Right-handed alpha
Helix 11
AB2
A
272 286Right-handed alpha
Helix 12
AB3
A
300 315Right-handed alpha
Helix 13
AB4
A
316 319Right-handed 310
Helix 14
AB5
A
333 335Right-handed 310
Helix 15
AB6
A
336 350Right-handed alpha
Helix 16
AB7
A
353 368Right-handed alpha
Helix 17
AB8
A
399 403Right-handed 310
Helix 18
AB9
A
404 420Right-handed alpha
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There are 4 sheets in PDB entry 5DN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
4 8parallel
Strand 4
A
85 91parallel
Strand 5
A
113 119parallel
Strand 6
A
142 143parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
427 431anti-parallel
Strand 3
A
392 398parallel
Strand 4
A
379 387anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
223 228anti-parallel
Strand 4
A
176 181parallel
Strand 5
A
260 266parallel
Strand 6
A
288 294parallel
Strand 7
A
322 325parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
376 377anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il