Analysis of interatomic Contacts of Structural Units in PDB entry:
5DNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DNI entry

There are 2 chains in PDB entry 5DNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 179
B
 MET 1GLU 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5DNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 16Right-handed alpha
Helix 2
AA2
A
32 45Right-handed alpha
Helix 3
AA3
A
81 86Right-handed 310
Helix 4
AA4
A
88 97Right-handed alpha
Helix 5
AA5
A
110 119Right-handed alpha
Helix 6
AA6
A
129 134Right-handed alpha
Helix 7
AA7
A
145 150Right-handed alpha
Helix 8
AA8
B
9 16Right-handed alpha
Helix 9
AA9
B
32 45Right-handed alpha
Helix 10
AB1
B
81 86Right-handed 310
Helix 11
AB2
B
88 97Right-handed alpha
Helix 12
AB3
B
108 110Right-handed 310
Helix 13
AB4
B
111 119Right-handed alpha
Helix 14
AB5
B
129 136Right-handed alpha
Helix 15
AB6
B
145 150Right-handed alpha
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There are 6 sheets in PDB entry 5DNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
21 30parallel
Strand 3
A
57 59parallel
Strand 4
A
100 103parallel
Strand 5
A
121 124parallel
Strand 6
A
155 170anti-parallel
Strand 7
A
137 144anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
21 30parallel
Strand 3
A
155 170anti-parallel
Strand 4
A
137 144anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
71 76anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
21 30parallel
Strand 3
B
57 59parallel
Strand 4
B
100 103parallel
Strand 5
B
121 124parallel
Strand 6
B
155 170anti-parallel
Strand 7
B
137 144anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
21 30parallel
Strand 3
B
155 170anti-parallel
Strand 4
B
137 144anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
B
72 76anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il