Analysis of interatomic Contacts of Structural Units in PDB entry:
5DNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DNX entry

There are 3 chains in PDB entry 5DNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 176
C
 MET 1LEU 176
B
 MET 1LEU 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5DNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 39Right-handed alpha
Helix 2
AA2
A
50 70Right-handed alpha
Helix 3
AA3
A
115 131Right-handed alpha
Helix 4
AA4
A
143 163Right-handed alpha
Helix 5
AA5
C
24 39Right-handed alpha
Helix 6
AA6
C
50 70Right-handed alpha
Helix 7
AA7
C
115 131Right-handed alpha
Helix 8
AA8
C
143 163Right-handed alpha
Helix 9
AA9
B
24 39Right-handed alpha
Helix 10
AB1
B
50 70Right-handed alpha
Helix 11
AB2
B
115 131Right-handed alpha
Helix 12
AB3
B
143 163Right-handed alpha
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There are 6 sheets in PDB entry 5DNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
8 14anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
20 21parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 84first strand
Strand 2
A
87 94anti-parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
100 104parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
8 14anti-parallel
Strand 3
C
42 48anti-parallel
Strand 4
C
20 21parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 84first strand
Strand 2
C
87 94anti-parallel
Strand 3
C
133 140anti-parallel
Strand 4
C
100 104parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
8 14anti-parallel
Strand 3
B
42 48anti-parallel
Strand 4
B
20 21parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 84first strand
Strand 2
B
87 94anti-parallel
Strand 3
B
133 140anti-parallel
Strand 4
B
100 104parallel
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