Analysis of interatomic Contacts of Structural Units in PDB entry:
5DO4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DO4 entry

There are 6 chains in PDB entry 5DO4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLY 5ARG 36
H
 ILE 1GLY 258
A
 G 1 A 5
A
 A 7 G 10
A
 G 13 G 16
A
 A 22 A 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5DO4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
15 19Right-handed 310
Helix 2
AA2
L
24 32Right-handed alpha
Helix 3
AA3
H
41 44Right-handed 310
Helix 4
AA4
H
48 51Right-handed 310
Helix 5
AA5
H
55 57Right-handed 310
Helix 6
AA6
H
122 130Right-handed alpha
Helix 7
AA7
H
152 156Right-handed 310
Helix 8
AA8
H
169 176Right-handed alpha
Helix 9
AA9
H
191 195Right-handed 310
Helix 10
AB1
H
246 258Right-handed alpha
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There are 3 sheets in PDB entry 5DO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 6first strand
Strand 2
H
161 166anti-parallel
Strand 3
H
135 140anti-parallel
Strand 4
H
208 212anti-parallel
Strand 5
H
219 227anti-parallel
Strand 6
H
238 242anti-parallel
Strand 7
H
185 188anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
15 20first strand
Strand 2
H
25 32anti-parallel
Strand 3
H
37 40anti-parallel
Strand 4
H
101 105anti-parallel
Strand 5
H
77 86anti-parallel
Strand 6
H
59 63anti-parallel
Strand 7
H
15 20anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
46 47first strand
Strand 2
H
52 53anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il