Analysis of interatomic Contacts of Structural Units in PDB entry:
5DO7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DO7 entry

There are 4 chains in PDB entry 5DO7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 34	SER 650
B	LEU 23	TRP 673
D	GLN 24	PRO 669
C	HIS 36	ILE 649

There are105 helices in PDB entry 5DO7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	100	Right-handed alpha
Helix 2	AA2	A	124	129	Right-handed alpha
Helix 3	AA3	A	143	156	Right-handed alpha
Helix 4	AA4	A	162	175	Right-handed alpha
Helix 5	AA5	A	177	181	Right-handed 310
Helix 6	AA6	A	194	208	Right-handed alpha
Helix 7	AA7	A	224	241	Right-handed alpha
Helix 8	AA8	A	255	260	Right-handed 310
Helix 9	AA9	A	276	287	Right-handed alpha
Helix 10	AB1	A	296	306	Right-handed alpha
Helix 11	AB2	A	311	332	Right-handed alpha
Helix 12	AB3	A	332	348	Right-handed alpha
Helix 13	AB4	A	363	381	Right-handed alpha
Helix 14	AB5	A	382	405	Right-handed alpha
Helix 15	AB6	A	415	428	Right-handed alpha
Helix 16	AB7	A	431	454	Right-handed alpha
Helix 17	AB8	A	459	491	Right-handed alpha
Helix 18	AB9	A	495	506	Right-handed alpha
Helix 19	AC1	A	506	524	Right-handed alpha
Helix 20	AC2	A	527	546	Right-handed alpha
Helix 21	AC3	A	551	555	Right-handed 310
Helix 22	AC4	A	556	564	Right-handed alpha
Helix 23	AC5	A	566	581	Right-handed alpha
Helix 24	AC6	A	605	613	Right-handed alpha
Helix 25	AC7	A	615	649	Right-handed alpha
Helix 26	AC8	B	110	120	Right-handed alpha
Helix 27	AC9	B	140	148	Right-handed alpha
Helix 28	AD1	B	162	175	Right-handed alpha
Helix 29	AD2	B	180	193	Right-handed alpha
Helix 30	AD3	B	206	211	Right-handed alpha
Helix 31	AD4	B	214	225	Right-handed alpha
Helix 32	AD5	B	226	230	Right-handed 310
Helix 33	AD6	B	244	261	Right-handed alpha
Helix 34	AD7	B	273	279	Right-handed alpha
Helix 35	AD8	B	297	304	Right-handed alpha
Helix 36	AD9	B	305	307	Right-handed 310
Helix 37	AE1	B	315	321	Right-handed alpha
Helix 38	AE2	B	344	366	Right-handed alpha
Helix 39	AE3	B	395	413	Right-handed alpha
Helix 40	AE4	B	413	435	Right-handed alpha
Helix 41	AE5	B	444	458	Right-handed alpha
Helix 42	AE6	B	459	473	Right-handed alpha
Helix 43	AE7	B	475	484	Right-handed alpha
Helix 44	AE8	B	492	500	Right-handed alpha
Helix 45	AE9	B	500	519	Right-handed alpha
Helix 46	AF1	B	525	553	Right-handed alpha
Helix 47	AF2	B	555	574	Right-handed alpha
Helix 48	AF3	B	574	579	Right-handed alpha
Helix 49	AF4	B	584	592	Right-handed alpha
Helix 50	AF5	B	594	609	Right-handed alpha
Helix 51	AF6	B	627	633	Right-handed alpha
Helix 52	AF7	B	634	638	Right-handed 310
Helix 53	AF8	B	641	665	Right-handed alpha
Helix 54	AF9	D	110	120	Right-handed alpha
Helix 55	AG1	D	140	148	Right-handed alpha
Helix 56	AG2	D	162	175	Right-handed alpha
Helix 57	AG3	D	180	193	Right-handed alpha
Helix 58	AG4	D	214	225	Right-handed alpha
Helix 59	AG5	D	226	230	Right-handed 310
Helix 60	AG6	D	244	261	Right-handed alpha
Helix 61	AG7	D	273	279	Right-handed alpha
Helix 62	AG8	D	298	304	Right-handed alpha
Helix 63	AG9	D	305	307	Right-handed 310
Helix 64	AH1	D	314	321	Right-handed alpha
Helix 65	AH2	D	326	335	Right-handed alpha
Helix 66	AH3	D	335	348	Right-handed alpha
Helix 67	AH4	D	394	413	Right-handed alpha
Helix 68	AH5	D	413	435	Right-handed alpha
Helix 69	AH6	D	444	458	Right-handed alpha
Helix 70	AH7	D	459	473	Right-handed alpha
Helix 71	AH8	D	475	484	Right-handed alpha
Helix 72	AH9	D	494	500	Right-handed alpha
Helix 73	AI1	D	500	519	Right-handed alpha
Helix 74	AI2	D	525	553	Right-handed alpha
Helix 75	AI3	D	555	574	Right-handed alpha
Helix 76	AI4	D	574	579	Right-handed alpha
Helix 77	AI5	D	587	593	Right-handed 310
Helix 78	AI6	D	594	609	Right-handed alpha
Helix 79	AI7	D	627	634	Right-handed alpha
Helix 80	AI8	D	641	665	Right-handed alpha
Helix 81	AI9	C	90	100	Right-handed alpha
Helix 82	AJ1	C	124	129	Right-handed alpha
Helix 83	AJ2	C	143	156	Right-handed alpha
Helix 84	AJ3	C	162	176	Right-handed alpha
Helix 85	AJ4	C	177	181	Right-handed 310
Helix 86	AJ5	C	194	206	Right-handed alpha
Helix 87	AJ6	C	224	241	Right-handed alpha
Helix 88	AJ7	C	256	260	Right-handed 310
Helix 89	AJ8	C	276	287	Right-handed alpha
Helix 90	AJ9	C	296	306	Right-handed alpha
Helix 91	AK1	C	312	332	Right-handed alpha
Helix 92	AK2	C	332	345	Right-handed alpha
Helix 93	AK3	C	363	381	Right-handed alpha
Helix 94	AK4	C	382	405	Right-handed alpha
Helix 95	AK5	C	416	428	Right-handed alpha
Helix 96	AK6	C	431	454	Right-handed alpha
Helix 97	AK7	C	459	491	Right-handed alpha
Helix 98	AK8	C	495	506	Right-handed alpha
Helix 99	AK9	C	506	524	Right-handed alpha
Helix 100	AL1	C	527	546	Right-handed alpha
Helix 101	AL2	C	551	555	Right-handed 310
Helix 102	AL3	C	556	564	Right-handed alpha
Helix 103	AL4	C	566	581	Right-handed alpha
Helix 104	AL5	C	605	613	Right-handed alpha
Helix 105	AL6	C	615	649	Right-handed alpha

There are 9 sheets in PDB entry 5DO7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	77	first strand
Strand 2	A	37	45	anti-parallel
Strand 3	A	109	115	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	213	217	parallel
Strand 3	A	244	248	parallel
Strand 4	A	81	86	parallel
Strand 5	A	262	267	parallel
Strand 6	A	270	275	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	35	42	anti-parallel
Strand 3	B	129	134	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	233	237	parallel
Strand 3	B	264	268	parallel
Strand 4	B	100	103	parallel
Strand 5	B	282	287	parallel
Strand 6	B	290	296	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	614	first strand
Strand 2	B	625	626	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	35	42	anti-parallel
Strand 3	D	129	134	anti-parallel
Strand 4	D	137	138	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	151	first strand
Strand 2	D	233	237	parallel
Strand 3	D	264	268	parallel
Strand 4	D	100	103	parallel
Strand 5	D	282	287	parallel
Strand 6	D	290	296	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	77	first strand
Strand 2	C	37	45	anti-parallel
Strand 3	C	109	115	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	132	first strand
Strand 2	C	213	217	parallel
Strand 3	C	244	248	parallel
Strand 4	C	81	86	parallel
Strand 5	C	262	267	parallel
Strand 6	C	270	275	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DO7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DO7