Analysis of interatomic Contacts of Structural Units in PDB entry:
5DO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DO8 entry

There are 3 chains in PDB entry 5DO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 3ALA 555
A
 GLU 3GLY 554
C
 LYS 4LEU 89
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 5DO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
5 9Right-handed 310
Helix 2
AA2
B
16 20Right-handed 310
Helix 3
AA3
B
30 36Right-handed alpha
Helix 4
AA4
B
37 45Right-handed alpha
Helix 5
AA5
B
78 91Right-handed alpha
Helix 6
AA6
B
109 116Right-handed alpha
Helix 7
AA7
B
123 127Right-handed 310
Helix 8
AA8
B
131 135Right-handed 310
Helix 9
AA9
B
172 189Right-handed alpha
Helix 10
AB1
B
198 202Right-handed 310
Helix 11
AB2
B
231 243Right-handed alpha
Helix 12
AB3
B
244 247Right-handed 310
Helix 13
AB4
B
259 267Right-handed alpha
Helix 14
AB5
B
268 272Right-handed 310
Helix 15
AB6
B
280 284Right-handed 310
Helix 16
AB7
B
299 315Right-handed alpha
Helix 17
AB8
B
331 336Right-handed alpha
Helix 18
AB9
B
342 356Right-handed alpha
Helix 19
AC1
B
366 370Right-handed 310
Helix 20
AC2
B
378 382Right-handed 310
Helix 21
AC3
B
384 397Right-handed alpha
Helix 22
AC4
B
400 412Right-handed alpha
Helix 23
AC5
B
413 417Right-handed 310
Helix 24
AC6
B
425 430Right-handed 310
Helix 25
AC7
B
440 445Right-handed 310
Helix 26
AC8
B
447 454Right-handed alpha
Helix 27
AC9
B
457 472Right-handed alpha
Helix 28
AD1
B
472 478Right-handed alpha
Helix 29
AD2
B
517 526Right-handed alpha
Helix 30
AD3
A
5 9Right-handed 310
Helix 31
AD4
A
16 20Right-handed 310
Helix 32
AD5
A
30 36Right-handed alpha
Helix 33
AD6
A
37 45Right-handed alpha
Helix 34
AD7
A
78 92Right-handed alpha
Helix 35
AD8
A
109 116Right-handed alpha
Helix 36
AD9
A
123 127Right-handed 310
Helix 37
AE1
A
131 135Right-handed 310
Helix 38
AE2
A
172 190Right-handed alpha
Helix 39
AE3
A
198 202Right-handed 310
Helix 40
AE4
A
222 226Right-handed 310
Helix 41
AE5
A
231 243Right-handed alpha
Helix 42
AE6
A
244 247Right-handed 310
Helix 43
AE7
A
259 267Right-handed alpha
Helix 44
AE8
A
268 272Right-handed 310
Helix 45
AE9
A
299 315Right-handed alpha
Helix 46
AF1
A
331 336Right-handed alpha
Helix 47
AF2
A
342 356Right-handed alpha
Helix 48
AF3
A
366 370Right-handed 310
Helix 49
AF4
A
378 382Right-handed 310
Helix 50
AF5
A
384 398Right-handed alpha
Helix 51
AF6
A
400 412Right-handed alpha
Helix 52
AF7
A
413 417Right-handed 310
Helix 53
AF8
A
425 430Right-handed 310
Helix 54
AF9
A
440 445Right-handed 310
Helix 55
AG1
A
447 454Right-handed alpha
Helix 56
AG2
A
457 472Right-handed alpha
Helix 57
AG3
A
472 478Right-handed alpha
Helix 58
AG4
A
517 527Right-handed alpha
Helix 59
AG5
C
5 9Right-handed 310
Helix 60
AG6
C
16 21Right-handed alpha
Helix 61
AG7
C
30 36Right-handed alpha
Helix 62
AG8
C
37 45Right-handed alpha
Helix 63
AG9
C
74 77Right-handed 310
Helix 64
AH1
C
78 92Right-handed alpha
Helix 65
AH2
C
109 116Right-handed alpha
Helix 66
AH3
C
123 127Right-handed 310
Helix 67
AH4
C
131 135Right-handed 310
Helix 68
AH5
C
172 189Right-handed alpha
Helix 69
AH6
C
198 202Right-handed 310
Helix 70
AH7
C
231 243Right-handed alpha
Helix 71
AH8
C
244 247Right-handed 310
Helix 72
AH9
C
259 268Right-handed alpha
Helix 73
AI1
C
269 272Right-handed 310
Helix 74
AI2
C
280 284Right-handed 310
Helix 75
AI3
C
299 315Right-handed alpha
Helix 76
AI4
C
331 336Right-handed alpha
Helix 77
AI5
C
342 356Right-handed alpha
Helix 78
AI6
C
366 370Right-handed 310
Helix 79
AI7
C
378 382Right-handed 310
Helix 80
AI8
C
384 397Right-handed alpha
Helix 81
AI9
C
400 412Right-handed alpha
Helix 82
AJ1
C
413 417Right-handed 310
Helix 83
AJ2
C
425 430Right-handed 310
Helix 84
AJ3
C
440 445Right-handed 310
Helix 85
AJ4
C
447 454Right-handed alpha
Helix 86
AJ5
C
457 472Right-handed alpha
Helix 87
AJ6
C
473 478Right-handed alpha
Helix 88
AJ7
C
517 526Right-handed alpha
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There are 15 sheets in PDB entry 5DO8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
250 254parallel
Strand 3
B
193 196parallel
Strand 4
B
95 100parallel
Strand 5
B
48 51parallel
Strand 6
B
12 15parallel
Strand 7
B
360 364parallel
Strand 8
B
321 322parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
68 72anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
B
156 158anti-parallel
Strand 3
B
147 149anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 483first strand
Strand 2
B
490 497anti-parallel
Strand 3
B
500 507anti-parallel
Strand 4
B
547 553anti-parallel
Strand 5
B
528 532anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
513 514first strand
Strand 2
B
541 542anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
250 254parallel
Strand 3
A
193 196parallel
Strand 4
A
95 100parallel
Strand 5
A
48 51parallel
Strand 6
A
12 15parallel
Strand 7
A
360 364parallel
Strand 8
A
321 322parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
68 72anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
156 158anti-parallel
Strand 3
A
147 149anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 483first strand
Strand 2
A
490 496anti-parallel
Strand 3
A
501 507anti-parallel
Strand 4
A
547 552anti-parallel
Strand 5
A
528 532anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 514first strand
Strand 2
A
541 542anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
276 278first strand
Strand 2
C
250 254parallel
Strand 3
C
193 196parallel
Strand 4
C
95 100parallel
Strand 5
C
48 51parallel
Strand 6
C
12 15parallel
Strand 7
C
360 364parallel
Strand 8
C
321 322parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 56first strand
Strand 2
C
68 72anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 130first strand
Strand 2
C
156 158anti-parallel
Strand 3
C
147 149anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
479 483first strand
Strand 2
C
490 497anti-parallel
Strand 3
C
500 507anti-parallel
Strand 4
C
547 553anti-parallel
Strand 5
C
528 532anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
513 514first strand
Strand 2
C
541 542anti-parallel
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