Analysis of interatomic Contacts of Structural Units in PDB entry:
5DO9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DO9 entry

There are 6 chains in PDB entry 5DO9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 37GLN 350
B
 SER 40SER 173
C
 ARG 37GLN 350
D
 SER 40SER 173
E
 ARG 38GLN 350
F
 SER 40MET 41
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 87 helices in PDB entry 5DO9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 64Right-handed alpha
Helix 2
AA2
A
68 74Right-handed alpha
Helix 3
AA3
A
75 97Right-handed alpha
Helix 4
AA4
A
104 115Right-handed alpha
Helix 5
AA5
A
117 121Right-handed 310
Helix 6
AA6
A
127 137Right-handed alpha
Helix 7
AA7
A
138 147Right-handed alpha
Helix 8
AA8
A
148 151Right-handed 310
Helix 9
AA9
A
156 162Right-handed alpha
Helix 10
AB1
A
163 169Right-handed alpha
Helix 11
AB2
A
175 182Right-handed alpha
Helix 12
AB3
A
209 214Right-handed alpha
Helix 13
AB4
A
215 220Right-handed 310
Helix 14
AB5
A
233 237Right-handed 310
Helix 15
AB6
A
246 261Right-handed alpha
Helix 16
AB7
A
262 265Right-handed 310
Helix 17
AB8
A
275 283Right-handed alpha
Helix 18
AB9
A
287 291Right-handed 310
Helix 19
AC1
A
301 315Right-handed alpha
Helix 20
AC2
A
333 347Right-handed alpha
Helix 21
AC3
B
44 53Right-handed alpha
Helix 22
AC4
B
56 63Right-handed alpha
Helix 23
AC5
B
63 77Right-handed alpha
Helix 24
AC6
B
80 93Right-handed alpha
Helix 25
AC7
B
97 113Right-handed alpha
Helix 26
AC8
B
124 136Right-handed alpha
Helix 27
AC9
B
143 157Right-handed alpha
Helix 28
AD1
B
157 163Right-handed alpha
Helix 29
AD2
B
165 170Right-handed alpha
Helix 30
AD3
C
51 64Right-handed alpha
Helix 31
AD4
C
68 74Right-handed alpha
Helix 32
AD5
C
75 97Right-handed alpha
Helix 33
AD6
C
105 115Right-handed alpha
Helix 34
AD7
C
117 121Right-handed 310
Helix 35
AD8
C
127 138Right-handed alpha
Helix 36
AD9
C
138 146Right-handed alpha
Helix 37
AE1
C
147 151Right-handed 310
Helix 38
AE2
C
156 162Right-handed alpha
Helix 39
AE3
C
163 169Right-handed alpha
Helix 40
AE4
C
175 182Right-handed alpha
Helix 41
AE5
C
209 214Right-handed alpha
Helix 42
AE6
C
215 220Right-handed 310
Helix 43
AE7
C
233 237Right-handed 310
Helix 44
AE8
C
246 261Right-handed alpha
Helix 45
AE9
C
262 265Right-handed 310
Helix 46
AF1
C
275 283Right-handed alpha
Helix 47
AF2
C
287 291Right-handed 310
Helix 48
AF3
C
301 315Right-handed alpha
Helix 49
AF4
C
333 348Right-handed alpha
Helix 50
AF5
D
44 54Right-handed alpha
Helix 51
AF6
D
56 63Right-handed alpha
Helix 52
AF7
D
63 77Right-handed alpha
Helix 53
AF8
D
80 93Right-handed alpha
Helix 54
AF9
D
97 113Right-handed alpha
Helix 55
AG1
D
124 135Right-handed alpha
Helix 56
AG2
D
143 157Right-handed alpha
Helix 57
AG3
D
157 165Right-handed alpha
Helix 58
AG4
D
165 170Right-handed alpha
Helix 59
AG5
E
51 64Right-handed alpha
Helix 60
AG6
E
68 74Right-handed alpha
Helix 61
AG7
E
75 97Right-handed alpha
Helix 62
AG8
E
104 115Right-handed alpha
Helix 63
AG9
E
117 121Right-handed 310
Helix 64
AH1
E
127 138Right-handed alpha
Helix 65
AH2
E
138 147Right-handed alpha
Helix 66
AH3
E
148 151Right-handed 310
Helix 67
AH4
E
156 162Right-handed alpha
Helix 68
AH5
E
163 169Right-handed alpha
Helix 69
AH6
E
175 182Right-handed alpha
Helix 70
AH7
E
209 214Right-handed alpha
Helix 71
AH8
E
215 220Right-handed 310
Helix 72
AH9
E
233 237Right-handed 310
Helix 73
AI1
E
246 261Right-handed alpha
Helix 74
AI2
E
262 265Right-handed 310
Helix 75
AI3
E
275 283Right-handed alpha
Helix 76
AI4
E
287 291Right-handed 310
Helix 77
AI5
E
301 315Right-handed alpha
Helix 78
AI6
E
333 347Right-handed alpha
Helix 79
AI7
F
44 54Right-handed alpha
Helix 80
AI8
F
56 62Right-handed alpha
Helix 81
AI9
F
63 77Right-handed alpha
Helix 82
AJ1
F
80 93Right-handed alpha
Helix 83
AJ2
F
97 113Right-handed alpha
Helix 84
AJ3
F
124 137Right-handed alpha
Helix 85
AJ4
F
143 157Right-handed alpha
Helix 86
AJ5
F
157 164Right-handed alpha
Helix 87
AJ6
F
165 173Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5DO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 195first strand
Strand 2
A
200 206anti-parallel
Strand 3
A
39 45parallel
Strand 4
A
225 231parallel
Strand 5
A
268 274parallel
Strand 6
A
324 328parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
189 195first strand
Strand 2
C
200 206anti-parallel
Strand 3
C
39 45parallel
Strand 4
C
225 231parallel
Strand 5
C
268 274parallel
Strand 6
C
324 328parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
189 196first strand
Strand 2
E
199 206anti-parallel
Strand 3
E
39 45parallel
Strand 4
E
225 231parallel
Strand 5
E
268 274parallel
Strand 6
E
324 328parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il