Analysis of interatomic Contacts of Structural Units in PDB entry:
5DOB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DOB entry

There are 2 chains in PDB entry 5DOB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 53GLN 289
B
 ASN 4ALA 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5DOB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 63Right-handed 310
Helix 2
AA2
A
64 71Right-handed alpha
Helix 3
AA3
A
72 82Right-handed alpha
Helix 4
AA4
A
133 143Right-handed alpha
Helix 5
AA5
A
144 147Right-handed 310
Helix 6
AA6
A
151 157Right-handed alpha
Helix 7
AA7
A
161 169Right-handed alpha
Helix 8
AA8
A
171 185Right-handed alpha
Helix 9
AA9
A
213 225Right-handed alpha
Helix 10
AB1
A
256 267Right-handed alpha
Helix 11
AB2
A
270 289Right-handed alpha
Helix 12
AB3
B
5 19Right-handed alpha
Helix 13
AB4
B
22 24Right-handed 310
Helix 14
AB5
B
30 37Right-handed alpha
Helix 15
AB6
B
54 66Right-handed alpha
Helix 16
AB7
B
115 123Right-handed alpha
Helix 17
AB8
B
155 167Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5DOB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
B
144 152anti-parallel
Strand 3
B
130 137anti-parallel
Strand 4
B
52 53anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
B
144 152anti-parallel
Strand 3
B
103 106anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
115 118anti-parallel
Strand 3
A
105 109anti-parallel
Strand 4
A
210 212anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
228 235anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
198 205anti-parallel
Strand 5
A
188 195anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
43 47anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
71 76anti-parallel
Strand 5
B
111 114anti-parallel
Strand 6
B
97 99parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il