Analysis of interatomic Contacts of Structural Units in PDB entry:
5DOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DOF entry

There are 4 chains in PDB entry 5DOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 8GLN 163
B
 LYS 5GLN 163
C
 PRO 4ASN 164
D
 ASP 9ASN 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5DOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 17Right-handed 310
Helix 2
AA2
A
18 24Right-handed alpha
Helix 3
AA3
A
48 59Right-handed alpha
Helix 4
AA4
A
64 78Right-handed alpha
Helix 5
AA5
A
78 83Right-handed alpha
Helix 6
AA6
A
133 135Right-handed 310
Helix 7
AA7
A
149 160Right-handed alpha
Helix 8
AA8
B
15 17Right-handed 310
Helix 9
AA9
B
18 24Right-handed alpha
Helix 10
AB1
B
48 59Right-handed alpha
Helix 11
AB2
B
64 80Right-handed alpha
Helix 12
AB3
B
133 135Right-handed 310
Helix 13
AB4
B
149 160Right-handed alpha
Helix 14
AB5
C
15 17Right-handed 310
Helix 15
AB6
C
18 24Right-handed alpha
Helix 16
AB7
C
48 60Right-handed alpha
Helix 17
AB8
C
64 79Right-handed alpha
Helix 18
AB9
C
133 135Right-handed 310
Helix 19
AC1
C
149 161Right-handed alpha
Helix 20
AC2
D
15 17Right-handed 310
Helix 21
AC3
D
18 24Right-handed alpha
Helix 22
AC4
D
48 59Right-handed alpha
Helix 23
AC5
D
64 78Right-handed alpha
Helix 24
AC6
D
78 83Right-handed alpha
Helix 25
AC7
D
133 135Right-handed 310
Helix 26
AC8
D
149 161Right-handed alpha
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There are 8 sheets in PDB entry 5DOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
35 47parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
102 107anti-parallel
Strand 5
A
137 145parallel
Strand 6
A
112 113parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
35 47parallel
Strand 3
A
122 131anti-parallel
Strand 4
A
137 145anti-parallel
Strand 5
A
112 113parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
35 46parallel
Strand 3
B
94 99anti-parallel
Strand 4
B
102 107anti-parallel
Strand 5
B
137 145parallel
Strand 6
B
112 113parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
35 46parallel
Strand 3
B
122 131anti-parallel
Strand 4
B
137 145anti-parallel
Strand 5
B
112 113parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
D
113 114anti-parallel
Strand 3
D
137 145parallel
Strand 4
D
102 107parallel
Strand 5
D
94 99anti-parallel
Strand 6
D
35 47anti-parallel
Strand 7
D
12 13parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
D
113 114anti-parallel
Strand 3
D
137 145parallel
Strand 4
D
122 131anti-parallel
Strand 5
D
35 47anti-parallel
Strand 6
D
12 13parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
35 46parallel
Strand 3
C
94 99anti-parallel
Strand 4
C
102 107anti-parallel
Strand 5
C
137 145parallel
Strand 6
C
112 113parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
35 46parallel
Strand 3
C
122 131anti-parallel
Strand 4
C
137 145anti-parallel
Strand 5
C
112 113parallel
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