Analysis of interatomic Contacts of Structural Units in PDB entry:
5DOI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DOI entry

There are 8 chains in PDB entry 5DOI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 7	ASN 162
B	ASN 7	ASN 162
C	ASN 7	ASN 162
D	ASN 7	ASN 162
E	ASN 4	SER 125
F	ASN 4	SER 125
G	ASN 4	SER 125
H	ASN 4	SER 125

There are 26 helices in PDB entry 5DOI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	24	Right-handed alpha
Helix 2	AA2	A	48	60	Right-handed alpha
Helix 3	AA3	A	64	79	Right-handed alpha
Helix 4	AA4	A	151	160	Right-handed alpha
Helix 5	AA5	B	15	17	Right-handed 310
Helix 6	AA6	B	18	24	Right-handed alpha
Helix 7	AA7	B	48	60	Right-handed alpha
Helix 8	AA8	B	64	77	Right-handed alpha
Helix 9	AA9	B	151	161	Right-handed alpha
Helix 10	AB1	C	15	17	Right-handed 310
Helix 11	AB2	C	18	24	Right-handed alpha
Helix 12	AB3	C	48	60	Right-handed alpha
Helix 13	AB4	C	64	79	Right-handed alpha
Helix 14	AB5	C	151	160	Right-handed alpha
Helix 15	AB6	D	15	17	Right-handed 310
Helix 16	AB7	D	18	24	Right-handed alpha
Helix 17	AB8	D	48	59	Right-handed alpha
Helix 18	AB9	D	64	77	Right-handed alpha
Helix 19	AC1	D	151	161	Right-handed alpha
Helix 20	AC2	E	12	16	Right-handed 310
Helix 21	AC3	E	108	125	Right-handed alpha
Helix 22	AC4	F	9	16	Right-handed 310
Helix 23	AC5	F	108	123	Right-handed alpha
Helix 24	AC6	G	12	16	Right-handed 310
Helix 25	AC7	G	108	125	Right-handed alpha
Helix 26	AC8	H	108	123	Right-handed alpha

There are 12 sheets in PDB entry 5DOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	35	47	parallel
Strand 3	A	94	99	anti-parallel
Strand 4	A	102	107	anti-parallel
Strand 5	A	137	145	parallel
Strand 6	A	112	113	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	35	47	parallel
Strand 3	A	122	131	anti-parallel
Strand 4	A	137	145	anti-parallel
Strand 5	A	112	113	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	35	47	parallel
Strand 3	B	94	99	anti-parallel
Strand 4	B	102	107	anti-parallel
Strand 5	B	137	145	parallel
Strand 6	B	112	113	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	35	47	parallel
Strand 3	B	122	131	anti-parallel
Strand 4	B	137	145	anti-parallel
Strand 5	B	112	113	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	35	47	parallel
Strand 3	C	94	99	anti-parallel
Strand 4	C	102	107	anti-parallel
Strand 5	C	137	145	parallel
Strand 6	C	112	113	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	35	47	parallel
Strand 3	C	122	131	anti-parallel
Strand 4	C	137	145	anti-parallel
Strand 5	C	112	113	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	35	47	parallel
Strand 3	D	94	99	anti-parallel
Strand 4	D	102	107	anti-parallel
Strand 5	D	137	145	parallel
Strand 6	D	112	113	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	35	47	parallel
Strand 3	D	122	131	anti-parallel
Strand 4	D	137	145	anti-parallel
Strand 5	D	112	113	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	7	first strand
Strand 2	E	22	31	parallel
Strand 3	E	78	86	anti-parallel
Strand 4	E	97	106	anti-parallel
Strand 5	E	58	62	parallel
Strand 6	E	49	53	anti-parallel
Strand 7	E	22	31	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	21	31	parallel
Strand 3	F	78	86	anti-parallel
Strand 4	F	97	106	anti-parallel
Strand 5	F	58	62	parallel
Strand 6	F	49	53	anti-parallel
Strand 7	F	21	31	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	7	first strand
Strand 2	G	21	31	parallel
Strand 3	G	78	86	anti-parallel
Strand 4	G	97	106	anti-parallel
Strand 5	G	58	62	parallel
Strand 6	G	49	53	anti-parallel
Strand 7	G	21	31	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	7	first strand
Strand 2	H	21	31	parallel
Strand 3	H	78	86	anti-parallel
Strand 4	H	97	106	anti-parallel
Strand 5	H	58	62	parallel
Strand 6	H	49	53	anti-parallel
Strand 7	H	21	31	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DOI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DOI