Analysis of interatomic Contacts of Structural Units in PDB entry:
5DOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DOO entry

There are 2 chains in PDB entry 5DOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14GLY 534
B
 TYR 15GLY 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5DOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 35Right-handed alpha
Helix 2
AA2
A
55 65Right-handed alpha
Helix 3
AA3
A
76 90Right-handed alpha
Helix 4
AA4
A
101 105Right-handed 310
Helix 5
AA5
A
125 139Right-handed alpha
Helix 6
AA6
A
155 171Right-handed alpha
Helix 7
AA7
A
180 194Right-handed alpha
Helix 8
AA8
A
201 213Right-handed alpha
Helix 9
AA9
A
216 223Right-handed alpha
Helix 10
AB1
A
233 244Right-handed alpha
Helix 11
AB2
A
263 274Right-handed alpha
Helix 12
AB3
A
275 288Right-handed alpha
Helix 13
AB4
A
308 313Right-handed alpha
Helix 14
AB5
A
326 330Right-handed 310
Helix 15
AB6
A
355 368Right-handed alpha
Helix 16
AB7
A
375 386Right-handed alpha
Helix 17
AB8
A
390 402Right-handed alpha
Helix 18
AB9
A
431 441Right-handed alpha
Helix 19
AC1
A
463 471Right-handed alpha
Helix 20
AC2
A
478 492Right-handed alpha
Helix 21
AC3
A
507 528Right-handed alpha
Helix 22
AC4
B
24 35Right-handed alpha
Helix 23
AC5
B
55 57Right-handed 310
Helix 24
AC6
B
58 65Right-handed alpha
Helix 25
AC7
B
76 90Right-handed alpha
Helix 26
AC8
B
101 105Right-handed 310
Helix 27
AC9
B
125 139Right-handed alpha
Helix 28
AD1
B
154 170Right-handed alpha
Helix 29
AD2
B
180 194Right-handed alpha
Helix 30
AD3
B
201 214Right-handed alpha
Helix 31
AD4
B
216 224Right-handed alpha
Helix 32
AD5
B
233 243Right-handed alpha
Helix 33
AD6
B
253 258Right-handed alpha
Helix 34
AD7
B
263 273Right-handed alpha
Helix 35
AD8
B
275 288Right-handed alpha
Helix 36
AD9
B
308 313Right-handed alpha
Helix 37
AE1
B
355 368Right-handed alpha
Helix 38
AE2
B
374 386Right-handed alpha
Helix 39
AE3
B
390 401Right-handed alpha
Helix 40
AE4
B
402 407Right-handed alpha
Helix 41
AE5
B
431 441Right-handed alpha
Helix 42
AE6
B
463 471Right-handed alpha
Helix 43
AE7
B
478 492Right-handed alpha
Helix 44
AE8
B
511 529Right-handed alpha
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There are 6 sheets in PDB entry 5DOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
69 73parallel
Strand 3
A
46 50parallel
Strand 4
A
112 117parallel
Strand 5
A
140 151parallel
Strand 6
A
291 297anti-parallel
Strand 7
A
247 251anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
316 319anti-parallel
Strand 3
A
411 413anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 453first strand
Strand 2
A
459 462anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 99first strand
Strand 2
B
70 74parallel
Strand 3
B
47 50parallel
Strand 4
B
112 117parallel
Strand 5
B
140 151parallel
Strand 6
B
291 297anti-parallel
Strand 7
B
247 251anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 318first strand
Strand 2
B
412 413anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 444first strand
Strand 2
B
449 453anti-parallel
Strand 3
B
459 462anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il