Analysis of interatomic Contacts of Structural Units in PDB entry:
5DOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DOQ entry

There are 3 chains in PDB entry 5DOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 432
B
 MET 1LYS 330
C
 PHE 766GLU 795
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5DOQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 24Right-handed alpha
Helix 2
AA2
A
25 46Right-handed alpha
Helix 3
AA3
A
49 83Right-handed alpha
Helix 4
AA4
A
83 119Right-handed alpha
Helix 5
AA5
A
125 155Right-handed alpha
Helix 6
AA6
A
170 176Right-handed alpha
Helix 7
AA7
A
179 209Right-handed alpha
Helix 8
AA8
A
212 249Right-handed alpha
Helix 9
AA9
A
249 257Right-handed alpha
Helix 10
AB1
A
317 343Right-handed alpha
Helix 11
AB2
A
352 380Right-handed alpha
Helix 12
AB3
A
381 386Right-handed alpha
Helix 13
AB4
A
391 395Right-handed 310
Helix 14
AB5
A
401 431Right-handed alpha
Helix 15
AB6
B
2 36Right-handed alpha
Helix 16
AB7
B
41 50Right-handed alpha
Helix 17
AB8
B
52 74Right-handed alpha
Helix 18
AB9
B
74 85Right-handed alpha
Helix 19
AC1
B
85 108Right-handed alpha
Helix 20
AC2
B
109 116Right-handed alpha
Helix 21
AC3
B
117 138Right-handed alpha
Helix 22
AC4
B
153 157Right-handed 310
Helix 23
AC5
B
162 185Right-handed alpha
Helix 24
AC6
B
191 207Right-handed alpha
Helix 25
AC7
B
207 221Right-handed alpha
Helix 26
AC8
B
224 234Right-handed alpha
Helix 27
AC9
B
234 254Right-handed alpha
Helix 28
AD1
B
258 281Right-handed alpha
Helix 29
AD2
B
298 326Right-handed alpha
Helix 30
AD3
C
767 790Right-handed alpha
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There are 2 sheets in PDB entry 5DOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
165 167anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 274first strand
Strand 2
A
280 286anti-parallel
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