Analysis of interatomic Contacts of Structural Units in PDB entry:
5DOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DOV entry

There are 2 chains in PDB entry 5DOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3PRO 335
B
 SER -2PRO 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5DOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 17Right-handed 310
Helix 2
AA2
A
44 53Right-handed alpha
Helix 3
AA3
A
55 63Right-handed alpha
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
113 115Right-handed 310
Helix 6
AA6
A
125 130Right-handed alpha
Helix 7
AA7
A
132 144Right-handed alpha
Helix 8
AA8
A
162 176Right-handed alpha
Helix 9
AA9
A
184 186Right-handed 310
Helix 10
AB1
A
187 194Right-handed alpha
Helix 11
AB2
A
206 215Right-handed alpha
Helix 12
AB3
A
231 239Right-handed alpha
Helix 13
AB4
A
256 264Right-handed alpha
Helix 14
AB5
A
273 281Right-handed alpha
Helix 15
AB6
A
283 298Right-handed alpha
Helix 16
AB7
A
313 324Right-handed alpha
Helix 17
AB8
B
15 17Right-handed 310
Helix 18
AB9
B
44 52Right-handed alpha
Helix 19
AC1
B
55 64Right-handed alpha
Helix 20
AC2
B
67 71Right-handed 310
Helix 21
AC3
B
113 115Right-handed 310
Helix 22
AC4
B
125 130Right-handed alpha
Helix 23
AC5
B
132 144Right-handed alpha
Helix 24
AC6
B
162 175Right-handed alpha
Helix 25
AC7
B
184 194Right-handed alpha
Helix 26
AC8
B
206 215Right-handed alpha
Helix 27
AC9
B
232 238Right-handed alpha
Helix 28
AD1
B
256 264Right-handed alpha
Helix 29
AD2
B
273 281Right-handed alpha
Helix 30
AD3
B
283 298Right-handed alpha
Helix 31
AD4
B
313 324Right-handed alpha
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There are 8 sheets in PDB entry 5DOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
19 23anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
34 42anti-parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
96 100anti-parallel
Strand 5
A
117 119anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
34 42anti-parallel
Strand 3
A
329 333anti-parallel
Strand 4
A
306 310parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
178 183parallel
Strand 3
A
154 157parallel
Strand 4
A
220 225parallel
Strand 5
A
240 248parallel
Strand 6
A
268 271parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
19 23anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
34 42anti-parallel
Strand 3
B
76 84anti-parallel
Strand 4
B
96 100anti-parallel
Strand 5
B
117 118anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
34 42anti-parallel
Strand 3
B
329 333anti-parallel
Strand 4
B
306 310parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
178 183parallel
Strand 3
B
154 158parallel
Strand 4
B
220 225parallel
Strand 5
B
240 248parallel
Strand 6
B
268 271parallel
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