Analysis of interatomic Contacts of Structural Units in PDB entry:
5DOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DOW entry

There are 8 chains in PDB entry 5DOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 149
B
 ASN 565THR 583
C
 ALA 2THR 147
D
 LYS 563THR 583
E
 ALA 2ALA 148
F
 ARG 564THR 583
G
 ALA 2THR 147
H
 ARG 564THR 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5DOW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 21Right-handed alpha
Helix 2
AA2
A
29 40Right-handed alpha
Helix 3
AA3
A
45 55Right-handed alpha
Helix 4
AA4
A
66 77Right-handed alpha
Helix 5
AA5
A
82 94Right-handed alpha
Helix 6
AA6
A
102 113Right-handed alpha
Helix 7
AA7
A
118 130Right-handed alpha
Helix 8
AA8
A
139 148Right-handed alpha
Helix 9
AA9
B
566 577Right-handed alpha
Helix 10
AB1
B
578 583Right-handed alpha
Helix 11
AB2
C
6 21Right-handed alpha
Helix 12
AB3
C
29 40Right-handed alpha
Helix 13
AB4
C
45 55Right-handed alpha
Helix 14
AB5
C
65 80Right-handed alpha
Helix 15
AB6
C
81 94Right-handed alpha
Helix 16
AB7
C
102 113Right-handed alpha
Helix 17
AB8
C
118 130Right-handed alpha
Helix 18
AB9
C
139 147Right-handed alpha
Helix 19
AC1
D
566 577Right-handed alpha
Helix 20
AC2
D
578 583Right-handed alpha
Helix 21
AC3
E
6 21Right-handed alpha
Helix 22
AC4
E
29 40Right-handed alpha
Helix 23
AC5
E
45 55Right-handed alpha
Helix 24
AC6
E
65 80Right-handed alpha
Helix 25
AC7
E
81 94Right-handed alpha
Helix 26
AC8
E
102 113Right-handed alpha
Helix 27
AC9
E
118 130Right-handed alpha
Helix 28
AD1
E
139 147Right-handed alpha
Helix 29
AD2
F
565 577Right-handed alpha
Helix 30
AD3
F
578 583Right-handed alpha
Helix 31
AD4
G
6 21Right-handed alpha
Helix 32
AD5
G
29 40Right-handed alpha
Helix 33
AD6
G
45 55Right-handed alpha
Helix 34
AD7
G
65 79Right-handed alpha
Helix 35
AD8
G
81 94Right-handed alpha
Helix 36
AD9
G
102 113Right-handed alpha
Helix 37
AE1
G
118 130Right-handed alpha
Helix 38
AE2
G
138 147Right-handed alpha
Helix 39
AE3
H
565 577Right-handed alpha
Helix 40
AE4
H
578 583Right-handed alpha
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There are 4 sheets in PDB entry 5DOW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
64 65anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
137 138anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
C
137 138anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
100 101first strand
Strand 2
E
137 138anti-parallel
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