Analysis of interatomic Contacts of Structural Units in PDB entry:
5DP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DP1 entry

There is 1 chain in PDB entry 5DP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3PRO 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5DP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 17Right-handed 310
Helix 2
AA2
A
44 53Right-handed alpha
Helix 3
AA3
A
55 64Right-handed alpha
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
125 131Right-handed alpha
Helix 6
AA6
A
132 145Right-handed alpha
Helix 7
AA7
A
162 175Right-handed alpha
Helix 8
AA8
A
184 186Right-handed 310
Helix 9
AA9
A
187 193Right-handed alpha
Helix 10
AB1
A
206 215Right-handed alpha
Helix 11
AB2
A
230 237Right-handed alpha
Helix 12
AB3
A
255 263Right-handed alpha
Helix 13
AB4
A
272 280Right-handed alpha
Helix 14
AB5
A
282 297Right-handed alpha
Helix 15
AB6
A
312 323Right-handed alpha
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There are 4 sheets in PDB entry 5DP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
19 23anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 113first strand
Strand 2
A
33 43anti-parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
96 99anti-parallel
Strand 5
A
117 119anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 113first strand
Strand 2
A
33 43anti-parallel
Strand 3
A
328 332anti-parallel
Strand 4
A
305 309parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
178 183parallel
Strand 3
A
154 157parallel
Strand 4
A
220 225parallel
Strand 5
A
239 247parallel
Strand 6
A
267 270parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il