Analysis of interatomic Contacts of Structural Units in PDB entry:
5DP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DP2 entry

There is 1 chain in PDB entry 5DP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3PRO 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5DP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 19Right-handed 310
Helix 2
AA2
A
44 52Right-handed alpha
Helix 3
AA3
A
59 67Right-handed 310
Helix 4
AA4
A
69 73Right-handed 310
Helix 5
AA5
A
115 117Right-handed 310
Helix 6
AA6
A
127 132Right-handed alpha
Helix 7
AA7
A
134 146Right-handed alpha
Helix 8
AA8
A
164 177Right-handed alpha
Helix 9
AA9
A
186 188Right-handed 310
Helix 10
AB1
A
189 196Right-handed alpha
Helix 11
AB2
A
208 217Right-handed alpha
Helix 12
AB3
A
233 241Right-handed alpha
Helix 13
AB4
A
258 266Right-handed alpha
Helix 14
AB5
A
275 283Right-handed alpha
Helix 15
AB6
A
284 301Right-handed alpha
Helix 16
AB7
A
315 325Right-handed alpha
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There are 4 sheets in PDB entry 5DP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
20 23anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
34 43anti-parallel
Strand 3
A
78 86anti-parallel
Strand 4
A
98 102anti-parallel
Strand 5
A
119 121anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
34 43anti-parallel
Strand 3
A
331 335anti-parallel
Strand 4
A
308 312parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
180 185parallel
Strand 3
A
156 159parallel
Strand 4
A
222 227parallel
Strand 5
A
242 250parallel
Strand 6
A
270 273parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il