Analysis of interatomic Contacts of Structural Units in PDB entry:
5DPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DPL entry

There are 2 chains in PDB entry 5DPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14GLY 534
B
 PRO 14GLY 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5DPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 23Right-handed 310
Helix 2
AA2
A
24 35Right-handed alpha
Helix 3
AA3
A
55 65Right-handed alpha
Helix 4
AA4
A
76 91Right-handed alpha
Helix 5
AA5
A
101 105Right-handed 310
Helix 6
AA6
A
125 139Right-handed alpha
Helix 7
AA7
A
155 170Right-handed alpha
Helix 8
AA8
A
178 194Right-handed alpha
Helix 9
AA9
A
202 211Right-handed alpha
Helix 10
AB1
A
212 214Right-handed 310
Helix 11
AB2
A
216 224Right-handed alpha
Helix 12
AB3
A
234 242Right-handed alpha
Helix 13
AB4
A
243 245Right-handed 310
Helix 14
AB5
A
253 258Right-handed alpha
Helix 15
AB6
A
263 274Right-handed alpha
Helix 16
AB7
A
275 288Right-handed alpha
Helix 17
AB8
A
308 313Right-handed alpha
Helix 18
AB9
A
326 330Right-handed 310
Helix 19
AC1
A
355 368Right-handed alpha
Helix 20
AC2
A
375 386Right-handed alpha
Helix 21
AC3
A
390 401Right-handed alpha
Helix 22
AC4
A
402 408Right-handed alpha
Helix 23
AC5
A
433 438Right-handed alpha
Helix 24
AC6
A
463 471Right-handed alpha
Helix 25
AC7
A
478 492Right-handed alpha
Helix 26
AC8
A
507 529Right-handed alpha
Helix 27
AC9
B
20 23Right-handed 310
Helix 28
AD1
B
24 35Right-handed alpha
Helix 29
AD2
B
55 65Right-handed alpha
Helix 30
AD3
B
76 90Right-handed alpha
Helix 31
AD4
B
101 105Right-handed 310
Helix 32
AD5
B
120 124Right-handed 310
Helix 33
AD6
B
125 139Right-handed alpha
Helix 34
AD7
B
155 168Right-handed alpha
Helix 35
AD8
B
181 193Right-handed alpha
Helix 36
AD9
B
205 211Right-handed alpha
Helix 37
AE1
B
216 224Right-handed alpha
Helix 38
AE2
B
233 242Right-handed alpha
Helix 39
AE3
B
253 258Right-handed alpha
Helix 40
AE4
B
263 272Right-handed alpha
Helix 41
AE5
B
275 288Right-handed alpha
Helix 42
AE6
B
308 313Right-handed alpha
Helix 43
AE7
B
355 368Right-handed alpha
Helix 44
AE8
B
375 386Right-handed alpha
Helix 45
AE9
B
391 401Right-handed alpha
Helix 46
AF1
B
402 408Right-handed alpha
Helix 47
AF2
B
431 438Right-handed alpha
Helix 48
AF3
B
463 471Right-handed alpha
Helix 49
AF4
B
478 492Right-handed alpha
Helix 50
AF5
B
507 529Right-handed alpha
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There are 7 sheets in PDB entry 5DPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
70 74parallel
Strand 3
A
47 50parallel
Strand 4
A
112 117parallel
Strand 5
A
140 151parallel
Strand 6
A
291 297anti-parallel
Strand 7
A
247 251anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
316 318anti-parallel
Strand 3
A
412 414anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 453first strand
Strand 2
A
459 462anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 99first strand
Strand 2
B
70 74parallel
Strand 3
B
47 50parallel
Strand 4
B
112 117parallel
Strand 5
B
140 151parallel
Strand 6
B
291 298anti-parallel
Strand 7
B
246 251anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 374first strand
Strand 2
B
316 319anti-parallel
Strand 3
B
411 414anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 340first strand
Strand 2
B
352 353anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
450 453first strand
Strand 2
B
459 462anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il