Analysis of interatomic Contacts of Structural Units in PDB entry:
5DPX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DPX entry

There are 2 chains in PDB entry 5DPX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23GLY 288
B
 GLU 23GLY 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5DPX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 40Right-handed 310
Helix 2
AA2
A
77 79Right-handed 310
Helix 3
AA3
A
80 92Right-handed alpha
Helix 4
AA4
A
107 112Right-handed alpha
Helix 5
AA5
A
113 121Right-handed alpha
Helix 6
AA6
A
128 137Right-handed alpha
Helix 7
AA7
A
222 237Right-handed alpha
Helix 8
AA8
A
246 251Right-handed 310
Helix 9
AA9
A
256 260Right-handed 310
Helix 10
AB1
A
266 288Right-handed alpha
Helix 11
AB2
B
35 40Right-handed 310
Helix 12
AB3
B
77 79Right-handed 310
Helix 13
AB4
B
80 91Right-handed alpha
Helix 14
AB5
B
94 96Right-handed 310
Helix 15
AB6
B
107 112Right-handed alpha
Helix 16
AB7
B
113 121Right-handed alpha
Helix 17
AB8
B
128 137Right-handed alpha
Helix 18
AB9
B
222 236Right-handed alpha
Helix 19
AC1
B
246 251Right-handed 310
Helix 20
AC2
B
256 260Right-handed 310
Helix 21
AC3
B
266 288Right-handed alpha
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There are 4 sheets in PDB entry 5DPX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
51 53anti-parallel
Strand 3
A
62 66anti-parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
98 102parallel
Strand 6
A
124 127parallel
Strand 7
A
158 159parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
171 177anti-parallel
Strand 3
A
186 194anti-parallel
Strand 4
A
197 203anti-parallel
Strand 5
A
241 243parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
51 53anti-parallel
Strand 3
B
62 66anti-parallel
Strand 4
B
69 73anti-parallel
Strand 5
B
98 102parallel
Strand 6
B
124 127parallel
Strand 7
B
158 159parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 168first strand
Strand 2
B
171 177anti-parallel
Strand 3
B
186 194anti-parallel
Strand 4
B
197 203anti-parallel
Strand 5
B
241 243parallel
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