Analysis of interatomic Contacts of Structural Units in PDB entry:
5DQ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DQ6 entry

There are 2 chains in PDB entry 5DQ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4ASN 359
B
 LEU 5GLN 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5DQ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 25Right-handed alpha
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
57 69Right-handed alpha
Helix 4
AA4
A
70 79Right-handed alpha
Helix 5
AA5
A
102 114Right-handed alpha
Helix 6
AA6
A
120 133Right-handed alpha
Helix 7
AA7
A
135 146Right-handed alpha
Helix 8
AA8
A
166 175Right-handed alpha
Helix 9
AA9
A
192 204Right-handed alpha
Helix 10
AB1
A
239 243Right-handed 310
Helix 11
AB2
A
292 298Right-handed alpha
Helix 12
AB3
A
298 303Right-handed alpha
Helix 13
AB4
A
341 357Right-handed alpha
Helix 14
AB5
B
9 14Right-handed alpha
Helix 15
AB6
B
14 25Right-handed alpha
Helix 16
AB7
B
42 46Right-handed 310
Helix 17
AB8
B
57 69Right-handed alpha
Helix 18
AB9
B
70 80Right-handed alpha
Helix 19
AC1
B
102 113Right-handed alpha
Helix 20
AC2
B
120 133Right-handed alpha
Helix 21
AC3
B
135 143Right-handed alpha
Helix 22
AC4
B
166 173Right-handed alpha
Helix 23
AC5
B
192 203Right-handed alpha
Helix 24
AC6
B
239 243Right-handed 310
Helix 25
AC7
B
293 297Right-handed 310
Helix 26
AC8
B
301 306Right-handed alpha
Helix 27
AC9
B
336 339Right-handed 310
Helix 28
AD1
B
340 355Right-handed alpha
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There are 10 sheets in PDB entry 5DQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
39 40anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
257 261anti-parallel
Strand 3
A
248 252anti-parallel
Strand 4
A
207 209parallel
Strand 5
A
231 233anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
327 329anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 279first strand
Strand 2
A
282 285anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 315first strand
Strand 2
A
322 325anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
39 40anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
257 261anti-parallel
Strand 3
B
248 252anti-parallel
Strand 4
B
207 211parallel
Strand 5
B
231 233anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 274first strand
Strand 2
B
327 329anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
283 285anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 314first strand
Strand 2
B
323 325anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il