Analysis of interatomic Contacts of Structural Units in PDB entry:
5DQN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DQN entry

There is 1 chain in PDB entry 5DQN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ALA 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5DQN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 21Right-handed alpha
Helix 2
AA2
A
23 34Right-handed alpha
Helix 3
AA3
A
58 68Right-handed alpha
Helix 4
AA4
A
88 93Right-handed alpha
Helix 5
AA5
A
94 102Right-handed 310
Helix 6
AA6
A
105 115Right-handed alpha
Helix 7
AA7
A
116 118Right-handed 310
Helix 8
AA8
A
119 125Right-handed alpha
Helix 9
AA9
A
126 145Right-handed alpha
Helix 10
AB1
A
149 153Right-handed alpha
Helix 11
AB2
A
155 167Right-handed alpha
Helix 12
AB3
A
169 171Right-handed 310
Helix 13
AB4
A
172 183Right-handed alpha
Helix 14
AB5
A
188 192Right-handed 310
Helix 15
AB6
A
195 215Right-handed alpha
Helix 16
AB7
A
221 227Right-handed alpha
Helix 17
AB8
A
237 252Right-handed alpha
Helix 18
AB9
A
253 270Right-handed alpha
Helix 19
AC1
A
270 281Right-handed alpha
Helix 20
AC2
A
284 294Right-handed alpha
Helix 21
AC3
A
324 328Right-handed alpha
Helix 22
AC4
A
362 381Right-handed alpha
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There are 4 sheets in PDB entry 5DQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
319 323parallel
Strand 4
A
298 303anti-parallel
Strand 5
A
72 73anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
405 407anti-parallel
Strand 3
A
385 386anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 309first strand
Strand 2
A
312 314anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
401 403anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il