Analysis of interatomic Contacts of Structural Units in PDB entry:
5DQO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DQO entry

There are 4 chains in PDB entry 5DQO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 270GLY 457
B
 SER 272GLY 457
C
 SER 272ASN 456
D
 SER 272GLY 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5DQO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
276 284Right-handed alpha
Helix 2
AA2
A
285 299Right-handed alpha
Helix 3
AA3
A
302 316Right-handed alpha
Helix 4
AA4
A
366 373Right-handed alpha
Helix 5
AA5
A
384 389Right-handed alpha
Helix 6
AA6
A
390 401Right-handed alpha
Helix 7
AA7
A
404 417Right-handed alpha
Helix 8
AA8
A
419 433Right-handed alpha
Helix 9
AA9
A
443 457Right-handed alpha
Helix 10
AB1
B
272 275Right-handed 310
Helix 11
AB2
B
276 284Right-handed alpha
Helix 12
AB3
B
285 299Right-handed alpha
Helix 13
AB4
B
303 315Right-handed alpha
Helix 14
AB5
B
366 371Right-handed alpha
Helix 15
AB6
B
384 389Right-handed alpha
Helix 16
AB7
B
390 401Right-handed alpha
Helix 17
AB8
B
404 417Right-handed alpha
Helix 18
AB9
B
419 433Right-handed alpha
Helix 19
AC1
B
443 456Right-handed alpha
Helix 20
AC2
C
272 275Right-handed 310
Helix 21
AC3
C
276 283Right-handed alpha
Helix 22
AC4
C
285 299Right-handed alpha
Helix 23
AC5
C
302 315Right-handed alpha
Helix 24
AC6
C
366 371Right-handed alpha
Helix 25
AC7
C
384 389Right-handed alpha
Helix 26
AC8
C
390 401Right-handed alpha
Helix 27
AC9
C
404 417Right-handed alpha
Helix 28
AD1
C
419 433Right-handed alpha
Helix 29
AD2
C
443 456Right-handed alpha
Helix 30
AD3
D
272 275Right-handed 310
Helix 31
AD4
D
276 284Right-handed alpha
Helix 32
AD5
D
285 298Right-handed alpha
Helix 33
AD6
D
302 316Right-handed alpha
Helix 34
AD7
D
366 373Right-handed alpha
Helix 35
AD8
D
384 389Right-handed alpha
Helix 36
AD9
D
390 400Right-handed alpha
Helix 37
AE1
D
406 417Right-handed alpha
Helix 38
AE2
D
420 433Right-handed alpha
Helix 39
AE3
D
443 456Right-handed alpha
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There are 4 sheets in PDB entry 5DQO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
348 351anti-parallel
Strand 3
A
318 321anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 321first strand
Strand 2
B
348 350anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
318 321first strand
Strand 2
C
348 351anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
318 322first strand
Strand 2
D
347 351anti-parallel
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