Analysis of interatomic Contacts of Structural Units in PDB entry:
5DQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DQP entry

There are 2 chains in PDB entry 5DQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 4GLY 430
B
 ARG 4GLY 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5DQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 24Right-handed 310
Helix 2
AA2
A
28 33Right-handed 310
Helix 3
AA3
A
34 48Right-handed alpha
Helix 4
AA4
A
74 86Right-handed alpha
Helix 5
AA5
A
101 116Right-handed alpha
Helix 6
AA6
A
129 136Right-handed alpha
Helix 7
AA7
A
142 162Right-handed alpha
Helix 8
AA8
A
167 171Right-handed 310
Helix 9
AA9
A
216 227Right-handed alpha
Helix 10
AB1
A
236 254Right-handed alpha
Helix 11
AB2
A
274 288Right-handed alpha
Helix 12
AB3
A
291 304Right-handed alpha
Helix 13
AB4
A
317 321Right-handed 310
Helix 14
AB5
A
330 345Right-handed alpha
Helix 15
AB6
A
347 355Right-handed alpha
Helix 16
AB7
A
361 375Right-handed alpha
Helix 17
AB8
A
389 399Right-handed alpha
Helix 18
AB9
A
399 406Right-handed alpha
Helix 19
AC1
A
417 422Right-handed alpha
Helix 20
AC2
B
20 24Right-handed 310
Helix 21
AC3
B
28 33Right-handed 310
Helix 22
AC4
B
34 48Right-handed alpha
Helix 23
AC5
B
74 86Right-handed alpha
Helix 24
AC6
B
101 116Right-handed alpha
Helix 25
AC7
B
129 135Right-handed alpha
Helix 26
AC8
B
142 162Right-handed alpha
Helix 27
AC9
B
216 227Right-handed alpha
Helix 28
AD1
B
236 254Right-handed alpha
Helix 29
AD2
B
274 287Right-handed alpha
Helix 30
AD3
B
295 303Right-handed alpha
Helix 31
AD4
B
330 343Right-handed alpha
Helix 32
AD5
B
347 356Right-handed alpha
Helix 33
AD6
B
361 375Right-handed alpha
Helix 34
AD7
B
389 399Right-handed alpha
Helix 35
AD8
B
399 406Right-handed alpha
Helix 36
AD9
B
417 422Right-handed alpha
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There are 7 sheets in PDB entry 5DQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
52 55parallel
Strand 3
A
90 96parallel
Strand 4
A
120 125parallel
Strand 5
A
210 213parallel
Strand 6
A
229 233parallel
Strand 7
A
262 267parallel
Strand 8
A
380 383parallel
Strand 9
A
7 11parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
181 182anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
193 194anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
358 360parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 360first strand
Strand 2
B
262 271parallel
Strand 3
B
380 383parallel
Strand 4
B
7 11parallel
Strand 5
B
52 55parallel
Strand 6
B
90 96parallel
Strand 7
B
120 125parallel
Strand 8
B
210 212parallel
Strand 9
B
229 232parallel
Strand 10
B
262 271parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
181 182anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
193 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il