Analysis of interatomic Contacts of Structural Units in PDB entry:
5DQR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DQR entry

There are 6 chains in PDB entry 5DQR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 41	LYS 461
B	PRO 51	LYS 461
C	ARG 40	SER 460
D	GLU 41	SER 460
E	THR 55	LYS 462
F	ARG 48	SER 460

There are144 helices in PDB entry 5DQR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	62	Right-handed 310
Helix 2	AA2	A	66	79	Right-handed 310
Helix 3	AA3	A	85	88	Right-handed 310
Helix 4	AA4	A	89	98	Right-handed alpha
Helix 5	AA5	A	106	113	Right-handed alpha
Helix 6	AA6	A	134	146	Right-handed alpha
Helix 7	AA7	A	172	178	Right-handed alpha
Helix 8	AA8	A	192	198	Right-handed alpha
Helix 9	AA9	A	209	219	Right-handed alpha
Helix 10	AB1	A	220	224	Right-handed 310
Helix 11	AB2	A	240	252	Right-handed alpha
Helix 12	AB3	A	284	286	Right-handed 310
Helix 13	AB4	A	290	294	Right-handed 310
Helix 14	AB5	A	296	301	Right-handed 310
Helix 15	AB6	A	326	330	Right-handed 310
Helix 16	AB7	A	338	347	Right-handed alpha
Helix 17	AB8	A	348	350	Right-handed 310
Helix 18	AB9	A	363	376	Right-handed alpha
Helix 19	AC1	A	388	403	Right-handed alpha
Helix 20	AC2	A	407	429	Right-handed alpha
Helix 21	AC3	A	429	438	Right-handed alpha
Helix 22	AC4	A	439	449	Right-handed alpha
Helix 23	AC5	A	453	460	Right-handed alpha
Helix 24	AC6	B	58	62	Right-handed 310
Helix 25	AC7	B	66	74	Right-handed 310
Helix 26	AC8	B	75	80	Right-handed alpha
Helix 27	AC9	B	85	88	Right-handed 310
Helix 28	AD1	B	89	99	Right-handed alpha
Helix 29	AD2	B	106	113	Right-handed alpha
Helix 30	AD3	B	134	146	Right-handed alpha
Helix 31	AD4	B	172	178	Right-handed alpha
Helix 32	AD5	B	188	191	Right-handed 310
Helix 33	AD6	B	192	199	Right-handed alpha
Helix 34	AD7	B	209	219	Right-handed alpha
Helix 35	AD8	B	220	223	Right-handed 310
Helix 36	AD9	B	240	250	Right-handed alpha
Helix 37	AE1	B	254	256	Right-handed 310
Helix 38	AE2	B	284	286	Right-handed 310
Helix 39	AE3	B	298	302	Right-handed 310
Helix 40	AE4	B	338	347	Right-handed alpha
Helix 41	AE5	B	348	350	Right-handed 310
Helix 42	AE6	B	363	378	Right-handed alpha
Helix 43	AE7	B	390	403	Right-handed alpha
Helix 44	AE8	B	407	429	Right-handed alpha
Helix 45	AE9	B	430	438	Right-handed alpha
Helix 46	AF1	B	439	449	Right-handed alpha
Helix 47	AF2	B	455	460	Right-handed 310
Helix 48	AF3	C	42	47	Right-handed alpha
Helix 49	AF4	C	58	62	Right-handed 310
Helix 50	AF5	C	66	74	Right-handed 310
Helix 51	AF6	C	75	80	Right-handed alpha
Helix 52	AF7	C	85	88	Right-handed 310
Helix 53	AF8	C	89	98	Right-handed alpha
Helix 54	AF9	C	106	113	Right-handed alpha
Helix 55	AG1	C	134	146	Right-handed alpha
Helix 56	AG2	C	172	179	Right-handed alpha
Helix 57	AG3	C	188	191	Right-handed 310
Helix 58	AG4	C	192	199	Right-handed alpha
Helix 59	AG5	C	210	218	Right-handed alpha
Helix 60	AG6	C	219	223	Right-handed 310
Helix 61	AG7	C	240	252	Right-handed alpha
Helix 62	AG8	C	254	256	Right-handed 310
Helix 63	AG9	C	284	286	Right-handed 310
Helix 64	AH1	C	291	295	Right-handed 310
Helix 65	AH2	C	326	330	Right-handed 310
Helix 66	AH3	C	338	347	Right-handed alpha
Helix 67	AH4	C	348	350	Right-handed 310
Helix 68	AH5	C	363	376	Right-handed alpha
Helix 69	AH6	C	377	379	Right-handed 310
Helix 70	AH7	C	388	403	Right-handed alpha
Helix 71	AH8	C	407	429	Right-handed alpha
Helix 72	AH9	C	430	438	Right-handed alpha
Helix 73	AI1	C	439	448	Right-handed alpha
Helix 74	AI2	C	455	460	Right-handed alpha
Helix 75	AI3	D	58	62	Right-handed 310
Helix 76	AI4	D	66	74	Right-handed 310
Helix 77	AI5	D	75	80	Right-handed alpha
Helix 78	AI6	D	85	88	Right-handed 310
Helix 79	AI7	D	89	99	Right-handed alpha
Helix 80	AI8	D	106	113	Right-handed alpha
Helix 81	AI9	D	134	146	Right-handed alpha
Helix 82	AJ1	D	172	178	Right-handed alpha
Helix 83	AJ2	D	188	191	Right-handed 310
Helix 84	AJ3	D	192	200	Right-handed alpha
Helix 85	AJ4	D	209	220	Right-handed alpha
Helix 86	AJ5	D	221	224	Right-handed 310
Helix 87	AJ6	D	240	252	Right-handed alpha
Helix 88	AJ7	D	254	256	Right-handed 310
Helix 89	AJ8	D	289	294	Right-handed 310
Helix 90	AJ9	D	298	302	Right-handed 310
Helix 91	AK1	D	326	330	Right-handed 310
Helix 92	AK2	D	338	347	Right-handed alpha
Helix 93	AK3	D	348	350	Right-handed 310
Helix 94	AK4	D	363	376	Right-handed alpha
Helix 95	AK5	D	390	403	Right-handed alpha
Helix 96	AK6	D	407	429	Right-handed alpha
Helix 97	AK7	D	430	438	Right-handed alpha
Helix 98	AK8	D	439	449	Right-handed alpha
Helix 99	AK9	D	453	460	Right-handed alpha
Helix 100	AL1	E	58	62	Right-handed 310
Helix 101	AL2	E	66	74	Right-handed 310
Helix 102	AL3	E	75	80	Right-handed alpha
Helix 103	AL4	E	85	88	Right-handed 310
Helix 104	AL5	E	89	99	Right-handed alpha
Helix 105	AL6	E	106	113	Right-handed alpha
Helix 106	AL7	E	134	146	Right-handed alpha
Helix 107	AL8	E	172	179	Right-handed alpha
Helix 108	AL9	E	188	191	Right-handed 310
Helix 109	AM1	E	192	199	Right-handed alpha
Helix 110	AM2	E	209	220	Right-handed alpha
Helix 111	AM3	E	221	224	Right-handed 310
Helix 112	AM4	E	240	250	Right-handed alpha
Helix 113	AM5	E	254	256	Right-handed 310
Helix 114	AM6	E	284	286	Right-handed 310
Helix 115	AM7	E	298	302	Right-handed 310
Helix 116	AM8	E	338	348	Right-handed alpha
Helix 117	AM9	E	363	379	Right-handed alpha
Helix 118	AN1	E	388	403	Right-handed alpha
Helix 119	AN2	E	407	429	Right-handed alpha
Helix 120	AN3	E	430	438	Right-handed alpha
Helix 121	AN4	E	439	448	Right-handed alpha
Helix 122	AN5	E	455	461	Right-handed 310
Helix 123	AN6	F	58	62	Right-handed 310
Helix 124	AN7	F	66	79	Right-handed 310
Helix 125	AN8	F	85	88	Right-handed 310
Helix 126	AN9	F	89	99	Right-handed alpha
Helix 127	AO1	F	106	113	Right-handed alpha
Helix 128	AO2	F	134	146	Right-handed alpha
Helix 129	AO3	F	172	179	Right-handed alpha
Helix 130	AO4	F	188	191	Right-handed 310
Helix 131	AO5	F	192	199	Right-handed alpha
Helix 132	AO6	F	210	218	Right-handed alpha
Helix 133	AO7	F	219	223	Right-handed 310
Helix 134	AO8	F	240	250	Right-handed alpha
Helix 135	AO9	F	254	256	Right-handed 310
Helix 136	AP1	F	284	286	Right-handed 310
Helix 137	AP2	F	291	295	Right-handed 310
Helix 138	AP3	F	338	348	Right-handed alpha
Helix 139	AP4	F	363	379	Right-handed alpha
Helix 140	AP5	F	388	403	Right-handed alpha
Helix 141	AP6	F	407	429	Right-handed alpha
Helix 142	AP7	F	430	438	Right-handed alpha
Helix 143	AP8	F	439	449	Right-handed alpha
Helix 144	AP9	F	453	458	Right-handed alpha

There are 18 sheets in PDB entry 5DQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	170	first strand
Strand 2	A	151	158	anti-parallel
Strand 3	A	203	208	parallel
Strand 4	A	227	233	parallel
Strand 5	A	312	315	parallel
Strand 6	A	332	336	anti-parallel
Strand 7	A	117	123	anti-parallel
Strand 8	A	352	356	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	263	first strand
Strand 2	A	268	273	anti-parallel
Strand 3	A	278	282	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	360	first strand
Strand 2	A	405	406	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	170	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	203	208	parallel
Strand 4	B	227	233	parallel
Strand 5	B	312	315	parallel
Strand 6	B	332	336	anti-parallel
Strand 7	B	117	123	anti-parallel
Strand 8	B	352	355	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	263	first strand
Strand 2	B	268	273	anti-parallel
Strand 3	B	278	282	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	405	406	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	170	first strand
Strand 2	C	151	158	anti-parallel
Strand 3	C	203	209	parallel
Strand 4	C	227	233	parallel
Strand 5	C	312	315	parallel
Strand 6	C	332	336	anti-parallel
Strand 7	C	117	123	anti-parallel
Strand 8	C	352	355	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	263	first strand
Strand 2	C	268	273	anti-parallel
Strand 3	C	278	282	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	360	first strand
Strand 2	C	405	406	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	170	first strand
Strand 2	D	151	157	anti-parallel
Strand 3	D	203	208	parallel
Strand 4	D	227	233	parallel
Strand 5	D	312	315	parallel
Strand 6	D	332	336	anti-parallel
Strand 7	D	117	123	anti-parallel
Strand 8	D	352	356	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	263	first strand
Strand 2	D	268	273	anti-parallel
Strand 3	D	278	282	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	360	first strand
Strand 2	D	405	406	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	170	first strand
Strand 2	E	151	158	anti-parallel
Strand 3	E	203	208	parallel
Strand 4	E	227	233	parallel
Strand 5	E	312	315	parallel
Strand 6	E	332	336	anti-parallel
Strand 7	E	117	123	anti-parallel
Strand 8	E	352	355	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	263	first strand
Strand 2	E	268	273	anti-parallel
Strand 3	E	278	282	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	359	360	first strand
Strand 2	E	405	406	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	165	170	first strand
Strand 2	F	151	157	anti-parallel
Strand 3	F	203	209	parallel
Strand 4	F	227	233	parallel
Strand 5	F	312	315	parallel
Strand 6	F	332	336	anti-parallel
Strand 7	F	117	123	anti-parallel
Strand 8	F	352	355	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	258	263	first strand
Strand 2	F	268	273	anti-parallel
Strand 3	F	278	282	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	360	first strand
Strand 2	F	405	406	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DQR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DQR