Analysis of interatomic Contacts of Structural Units in PDB entry:
5DQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DQS entry

There are 2 chains in PDB entry 5DQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ALA 214
D
 GLY 2THR 88
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5DQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
42 45Right-handed 310
Helix 3
AA3
A
46 53Right-handed alpha
Helix 4
AA4
A
71 79Right-handed alpha
Helix 5
AA5
A
81 86Right-handed alpha
Helix 6
AA6
A
88 106Right-handed alpha
Helix 7
AA7
A
106 119Right-handed alpha
Helix 8
AA8
A
124 146Right-handed alpha
Helix 9
AA9
A
158 175Right-handed alpha
Helix 10
AB1
A
177 182Right-handed alpha
Helix 11
AB2
A
184 196Right-handed alpha
Helix 12
AB3
A
197 205Right-handed alpha
Helix 13
AB4
D
8 19Right-handed alpha
Helix 14
AB5
D
31 42Right-handed alpha
Helix 15
AB6
D
49 61Right-handed alpha
Helix 16
AB7
D
62 66Right-handed 310
Helix 17
AB8
D
75 79Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5DQS.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
3 7parallel
Strand 3
A
60 63anti-parallel
Strand 4
A
68 69anti-parallel
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