Analysis of interatomic Contacts of Structural Units in PDB entry:
5DQT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DQT entry

There are 7 chains in PDB entry 5DQT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	VAL 15	ALA 281
C	THR 2	PRO 279
A	VAL 15	ALA 281
B	THR 2	ALA 281
F	MET 1	PRO 93
E	MET 1	PRO 93
L	VAL 15	VAL 65

There are100 helices in PDB entry 5DQT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	45	49	Right-handed 310
Helix 2	AA2	D	62	71	Right-handed alpha
Helix 3	AA3	D	80	83	Right-handed 310
Helix 4	AA4	D	95	108	Right-handed alpha
Helix 5	AA5	D	108	125	Right-handed alpha
Helix 6	AA6	D	134	156	Right-handed alpha
Helix 7	AA7	D	174	199	Right-handed alpha
Helix 8	AA8	D	213	224	Right-handed alpha
Helix 9	AA9	D	227	239	Right-handed alpha
Helix 10	AB1	D	244	258	Right-handed alpha
Helix 11	AB2	D	259	274	Right-handed alpha
Helix 12	AB3	C	10	14	Right-handed 310
Helix 13	AB4	C	45	47	Right-handed 310
Helix 14	AB5	C	62	71	Right-handed alpha
Helix 15	AB6	C	80	82	Right-handed 310
Helix 16	AB7	C	95	108	Right-handed alpha
Helix 17	AB8	C	108	125	Right-handed alpha
Helix 18	AB9	C	133	156	Right-handed alpha
Helix 19	AC1	C	174	199	Right-handed alpha
Helix 20	AC2	C	213	224	Right-handed alpha
Helix 21	AC3	C	227	239	Right-handed alpha
Helix 22	AC4	C	242	258	Right-handed alpha
Helix 23	AC5	C	259	274	Right-handed alpha
Helix 24	AC6	A	45	49	Right-handed 310
Helix 25	AC7	A	62	71	Right-handed alpha
Helix 26	AC8	A	80	83	Right-handed 310
Helix 27	AC9	A	95	108	Right-handed alpha
Helix 28	AD1	A	108	125	Right-handed alpha
Helix 29	AD2	A	133	154	Right-handed alpha
Helix 30	AD3	A	174	199	Right-handed alpha
Helix 31	AD4	A	213	221	Right-handed alpha
Helix 32	AD5	A	227	239	Right-handed alpha
Helix 33	AD6	A	242	258	Right-handed alpha
Helix 34	AD7	A	259	274	Right-handed alpha
Helix 35	AD8	B	10	14	Right-handed 310
Helix 36	AD9	B	45	47	Right-handed 310
Helix 37	AE1	B	62	71	Right-handed alpha
Helix 38	AE2	B	80	82	Right-handed 310
Helix 39	AE3	B	95	108	Right-handed alpha
Helix 40	AE4	B	108	125	Right-handed alpha
Helix 41	AE5	B	133	156	Right-handed alpha
Helix 42	AE6	B	174	199	Right-handed alpha
Helix 43	AE7	B	213	224	Right-handed alpha
Helix 44	AE8	B	227	238	Right-handed alpha
Helix 45	AE9	B	242	258	Right-handed alpha
Helix 46	AF1	B	259	274	Right-handed alpha
Helix 47	AF2	F	12	23	Right-handed alpha
Helix 48	AF3	F	36	51	Right-handed alpha
Helix 49	AF4	E	12	23	Right-handed alpha
Helix 50	AF5	E	36	51	Right-handed alpha
Helix 51	AF6	L	45	49	Right-handed 310
Helix 52	AF7	L	62	72	Right-handed alpha
Helix 53	AF8	L	80	83	Right-handed 310
Helix 54	AF9	L	95	108	Right-handed alpha
Helix 55	AG1	L	108	125	Right-handed alpha
Helix 56	AG2	L	133	156	Right-handed alpha
Helix 57	AG3	L	174	199	Right-handed alpha
Helix 58	AG4	L	213	224	Right-handed alpha
Helix 59	AG5	L	227	239	Right-handed alpha
Helix 60	AG6	L	242	258	Right-handed alpha
Helix 61	AG7	L	259	274	Right-handed alpha
Helix 62	AG8	K	10	14	Right-handed 310
Helix 63	AG9	K	45	47	Right-handed 310
Helix 64	AH1	K	62	71	Right-handed alpha
Helix 65	AH2	K	80	82	Right-handed 310
Helix 66	AH3	K	95	108	Right-handed alpha
Helix 67	AH4	K	108	125	Right-handed alpha
Helix 68	AH5	K	133	156	Right-handed alpha
Helix 69	AH6	K	174	199	Right-handed alpha
Helix 70	AH7	K	213	224	Right-handed alpha
Helix 71	AH8	K	227	238	Right-handed alpha
Helix 72	AH9	K	244	258	Right-handed alpha
Helix 73	AI1	K	259	274	Right-handed alpha
Helix 74	AI2	I	45	49	Right-handed 310
Helix 75	AI3	I	62	71	Right-handed alpha
Helix 76	AI4	I	80	83	Right-handed 310
Helix 77	AI5	I	95	108	Right-handed alpha
Helix 78	AI6	I	108	125	Right-handed alpha
Helix 79	AI7	I	133	157	Right-handed alpha
Helix 80	AI8	I	174	199	Right-handed alpha
Helix 81	AI9	I	213	224	Right-handed alpha
Helix 82	AJ1	I	227	239	Right-handed alpha
Helix 83	AJ2	I	242	258	Right-handed alpha
Helix 84	AJ3	I	259	274	Right-handed alpha
Helix 85	AJ4	J	10	14	Right-handed 310
Helix 86	AJ5	J	45	47	Right-handed 310
Helix 87	AJ6	J	62	71	Right-handed alpha
Helix 88	AJ7	J	80	82	Right-handed 310
Helix 89	AJ8	J	95	108	Right-handed alpha
Helix 90	AJ9	J	108	125	Right-handed alpha
Helix 91	AK1	J	133	156	Right-handed alpha
Helix 92	AK2	J	174	199	Right-handed alpha
Helix 93	AK3	J	213	224	Right-handed alpha
Helix 94	AK4	J	227	238	Right-handed alpha
Helix 95	AK5	J	242	258	Right-handed alpha
Helix 96	AK6	J	259	274	Right-handed alpha
Helix 97	AK7	N	12	23	Right-handed alpha
Helix 98	AK8	N	36	51	Right-handed alpha
Helix 99	AK9	M	12	23	Right-handed alpha
Helix 100	AL1	M	36	51	Right-handed alpha

There are 14 sheets in PDB entry 5DQT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	51	54	parallel
Strand 3	D	74	78	parallel
Strand 4	D	85	89	anti-parallel
Strand 5	C	84	89	anti-parallel
Strand 6	C	74	78	anti-parallel
Strand 7	C	49	54	parallel
Strand 8	C	15	20	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	44	first strand
Strand 2	D	31	36	anti-parallel
Strand 3	D	24	28	anti-parallel
Strand 4	D	59	61	parallel
Strand 5	C	59	61	anti-parallel
Strand 6	C	24	28	parallel
Strand 7	C	31	35	anti-parallel
Strand 8	C	41	43	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	51	54	parallel
Strand 3	A	74	78	parallel
Strand 4	A	85	89	anti-parallel
Strand 5	B	84	89	anti-parallel
Strand 6	B	74	78	anti-parallel
Strand 7	B	49	54	parallel
Strand 8	B	15	20	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	44	first strand
Strand 2	A	31	36	anti-parallel
Strand 3	A	24	28	anti-parallel
Strand 4	A	59	61	parallel
Strand 5	B	59	61	anti-parallel
Strand 6	B	24	28	parallel
Strand 7	B	31	35	anti-parallel
Strand 8	B	41	43	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	27	first strand
Strand 2	F	30	35	anti-parallel
Strand 3	F	2	9	anti-parallel
Strand 4	F	55	61	anti-parallel
Strand 5	F	68	73	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	83	first strand
Strand 2	F	86	90	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	27	first strand
Strand 2	E	30	35	anti-parallel
Strand 3	E	2	9	anti-parallel
Strand 4	E	55	61	anti-parallel
Strand 5	E	68	73	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	83	first strand
Strand 2	E	86	91	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	20	first strand
Strand 2	L	51	54	parallel
Strand 3	L	74	78	parallel
Strand 4	L	85	89	anti-parallel
Strand 5	K	84	89	anti-parallel
Strand 6	K	74	78	anti-parallel
Strand 7	K	49	54	parallel
Strand 8	K	15	20	parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	40	44	first strand
Strand 2	L	31	35	anti-parallel
Strand 3	L	24	28	anti-parallel
Strand 4	L	59	61	parallel
Strand 5	K	59	61	anti-parallel
Strand 6	K	24	28	parallel
Strand 7	K	31	35	anti-parallel
Strand 8	K	41	43	anti-parallel
Strand 9	N	86	91	anti-parallel
Strand 10	N	78	83	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	20	first strand
Strand 2	I	51	54	parallel
Strand 3	I	74	78	parallel
Strand 4	I	85	89	anti-parallel
Strand 5	J	84	89	anti-parallel
Strand 6	J	74	78	anti-parallel
Strand 7	J	49	54	parallel
Strand 8	J	15	20	parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	44	first strand
Strand 2	I	31	36	anti-parallel
Strand 3	I	24	28	anti-parallel
Strand 4	I	59	61	parallel
Strand 5	J	58	61	anti-parallel
Strand 6	J	23	28	parallel
Strand 7	J	31	35	anti-parallel
Strand 8	J	41	43	anti-parallel
Strand 9	M	86	91	anti-parallel
Strand 10	M	78	83	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	24	27	first strand
Strand 2	N	30	35	anti-parallel
Strand 3	N	2	9	anti-parallel
Strand 4	N	55	61	anti-parallel
Strand 5	N	68	73	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	24	27	first strand
Strand 2	M	30	35	anti-parallel
Strand 3	M	2	9	anti-parallel
Strand 4	M	55	61	anti-parallel
Strand 5	M	68	73	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DQT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DQT