Analysis of interatomic Contacts of Structural Units in PDB entry:
5DRO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DRO entry

There are 2 chains in PDB entry 5DRO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LYS 268
B
 GLY 2LYS 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5DRO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 51Right-handed 310
Helix 2
AA2
A
72 82Right-handed alpha
Helix 3
AA3
A
103 113Right-handed alpha
Helix 4
AA4
A
170 174Right-handed 310
Helix 5
AA5
A
185 192Right-handed alpha
Helix 6
AA6
A
221 236Right-handed alpha
Helix 7
AA7
A
237 239Right-handed 310
Helix 8
AA8
A
252 267Right-handed alpha
Helix 9
AA9
B
49 51Right-handed 310
Helix 10
AB1
B
72 82Right-handed alpha
Helix 11
AB2
B
103 112Right-handed alpha
Helix 12
AB3
B
170 174Right-handed 310
Helix 13
AB4
B
183 193Right-handed alpha
Helix 14
AB5
B
221 236Right-handed alpha
Helix 15
AB6
B
237 239Right-handed 310
Helix 16
AB7
B
252 267Right-handed alpha
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There are 12 sheets in PDB entry 5DRO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
114 120anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
37 41parallel
Strand 5
A
44 47anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 64anti-parallel
Strand 3
A
67 69anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
242 243parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
137 142anti-parallel
Strand 3
A
245 249anti-parallel
Strand 4
A
148 154parallel
Strand 5
A
161 167anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
204 206parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
114 120anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 16first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
87 92anti-parallel
Strand 4
B
37 41parallel
Strand 5
B
44 47anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
61 64anti-parallel
Strand 3
B
67 69anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
242 243parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 133first strand
Strand 2
B
138 142anti-parallel
Strand 3
B
245 249anti-parallel
Strand 4
B
148 154parallel
Strand 5
B
161 167anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
204 206parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il