Analysis of interatomic Contacts of Structural Units in PDB entry:
5DRX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DRX entry

There are 4 chains in PDB entry 5DRX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1SER 228
L
 ALA 0CYS 220
A
 GLN 1PRO 226
B
 ALA 0GLU 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5DRX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
86 90Right-handed 310
Helix 2
AA2
H
102 109Right-handed alpha
Helix 3
AA3
H
169 171Right-handed 310
Helix 4
AA4
H
198 202Right-handed 310
Helix 5
AA5
H
214 217Right-handed 310
Helix 6
AA6
L
84 88Right-handed 310
Helix 7
AA7
L
127 132Right-handed alpha
Helix 8
AA8
L
189 193Right-handed alpha
Helix 9
AA9
A
86 90Right-handed 310
Helix 10
AB1
A
102 109Right-handed alpha
Helix 11
AB2
A
169 171Right-handed 310
Helix 12
AB3
A
214 217Right-handed 310
Helix 13
AB4
B
84 88Right-handed 310
Helix 14
AB5
B
127 133Right-handed alpha
Helix 15
AB6
B
189 193Right-handed alpha
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There are 21 sheets in PDB entry 5DRX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
120 124parallel
Strand 3
H
91 100anti-parallel
Strand 4
H
32 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
133 137first strand
Strand 2
H
149 158anti-parallel
Strand 3
H
189 197anti-parallel
Strand 4
H
176 178anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
133 137first strand
Strand 2
H
149 158anti-parallel
Strand 3
H
189 197anti-parallel
Strand 4
H
182 183anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
164 167first strand
Strand 2
H
207 213anti-parallel
Strand 3
H
218 224anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
75 80anti-parallel
Strand 4
L
67 72anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
108 112parallel
Strand 3
L
89 95anti-parallel
Strand 4
L
38 43anti-parallel
Strand 5
L
50 54anti-parallel
Strand 6
L
58 59anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
108 112parallel
Strand 3
L
89 95anti-parallel
Strand 4
L
103 104anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
120 124first strand
Strand 2
L
135 145anti-parallel
Strand 3
L
179 188anti-parallel
Strand 4
L
165 169anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
159 160first strand
Strand 2
L
151 156anti-parallel
Strand 3
L
197 203anti-parallel
Strand 4
L
211 216anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
67 72anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
120 124parallel
Strand 3
A
91 100anti-parallel
Strand 4
A
32 39anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
57 59anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
120 124parallel
Strand 3
A
91 100anti-parallel
Strand 4
A
115 116anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
148 158anti-parallel
Strand 3
A
189 198anti-parallel
Strand 4
A
176 178anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
148 158anti-parallel
Strand 3
A
189 198anti-parallel
Strand 4
A
182 183anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
207 213anti-parallel
Strand 3
A
218 224anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
75 80anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
108 112parallel
Strand 3
B
89 95anti-parallel
Strand 4
B
38 43anti-parallel
Strand 5
B
50 54anti-parallel
Strand 6
B
58 59anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
108 112parallel
Strand 3
B
89 95anti-parallel
Strand 4
B
103 104anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
135 145anti-parallel
Strand 3
B
179 188anti-parallel
Strand 4
B
165 169anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 161first strand
Strand 2
B
151 156anti-parallel
Strand 3
B
197 203anti-parallel
Strand 4
B
211 216anti-parallel
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