Analysis of interatomic Contacts of Structural Units in PDB entry:
5DS3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DS3 entry

There is 1 chain in PDB entry 5DS3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 765LYS 1010
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5DS3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
768 780Right-handed alpha
Helix 2
AA2
A
789 796Right-handed alpha
Helix 3
AA3
A
808 821Right-handed alpha
Helix 4
AA4
A
843 849Right-handed alpha
Helix 5
AA5
A
850 852Right-handed 310
Helix 6
AA6
A
865 867Right-handed 310
Helix 7
AA7
A
868 876Right-handed alpha
Helix 8
AA8
A
900 906Right-handed alpha
Helix 9
AA9
A
907 909Right-handed 310
Helix 10
AB1
A
958 961Right-handed 310
Helix 11
AB2
A
993 995Right-handed 310
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There are 4 sheets in PDB entry 5DS3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 803first strand
Strand 2
A
830 841anti-parallel
Strand 3
A
997 1008anti-parallel
Strand 4
A
916 925anti-parallel
Strand 5
A
857 863anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 897first strand
Strand 2
A
988 991anti-parallel
Strand 3
A
947 950anti-parallel
Strand 4
A
929 932parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
974 976first strand
Strand 2
A
952 956anti-parallel
Strand 3
A
984 986parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
962 964first strand
Strand 2
A
967 969anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il