Analysis of interatomic Contacts of Structural Units in PDB entry:
5DS7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DS7 entry

There are 3 chains in PDB entry 5DS7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4PRO 103
B
 ALA 3ARG 107
C
 ILE 4ARG 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5DS7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 31Right-handed alpha
Helix 2
AA2
A
71 73Right-handed 310
Helix 3
AA3
A
74 87Right-handed alpha
Helix 4
AA4
B
20 32Right-handed alpha
Helix 5
AA5
B
54 56Right-handed 310
Helix 6
AA6
B
58 61Right-handed 310
Helix 7
AA7
B
71 73Right-handed 310
Helix 8
AA8
B
74 89Right-handed alpha
Helix 9
AA9
B
102 106Right-handed 310
Helix 10
AB1
C
20 32Right-handed alpha
Helix 11
AB2
C
71 73Right-handed 310
Helix 12
AB3
C
74 88Right-handed alpha
Helix 13
AB4
C
102 107Right-handed 310
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There are 4 sheets in PDB entry 5DS7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
36 46anti-parallel
Strand 3
B
36 39anti-parallel
Strand 4
B
63 70anti-parallel
Strand 5
B
7 17anti-parallel
Strand 6
B
92 100anti-parallel
Strand 7
A
92 102anti-parallel
Strand 8
A
5 17anti-parallel
Strand 9
A
63 70anti-parallel
Strand 10
A
36 46anti-parallel
Strand 11
A
49 52anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
36 46anti-parallel
Strand 3
A
63 70anti-parallel
Strand 4
A
5 17anti-parallel
Strand 5
A
92 102anti-parallel
Strand 6
C
92 100anti-parallel
Strand 7
C
7 17anti-parallel
Strand 8
C
63 70anti-parallel
Strand 9
C
36 46anti-parallel
Strand 10
C
49 50anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
36 46anti-parallel
Strand 3
C
36 46anti-parallel
Strand 4
C
49 50anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
36 46anti-parallel
Strand 3
C
36 46anti-parallel
Strand 4
B
43 45anti-parallel
Strand 5
B
50 52anti-parallel
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