Analysis of interatomic Contacts of Structural Units in PDB entry:
5DSE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DSE entry

There are 3 chains in PDB entry 5DSE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 140LEU 843
B
 GLY 7PRO 287
C
 SER 8LEU 554
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 5DSE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
140 153Right-handed alpha
Helix 2
AA2
A
172 193Right-handed alpha
Helix 3
AA3
A
215 233Right-handed alpha
Helix 4
AA4
A
234 248Right-handed alpha
Helix 5
AA5
A
254 273Right-handed alpha
Helix 6
AA6
A
323 340Right-handed alpha
Helix 7
AA7
A
364 375Right-handed alpha
Helix 8
AA8
A
378 390Right-handed alpha
Helix 9
AA9
A
396 411Right-handed alpha
Helix 10
AB1
A
412 427Right-handed alpha
Helix 11
AB2
A
431 443Right-handed alpha
Helix 12
AB3
A
447 459Right-handed alpha
Helix 13
AB4
A
466 487Right-handed alpha
Helix 14
AB5
A
489 511Right-handed alpha
Helix 15
AB6
A
514 528Right-handed alpha
Helix 16
AB7
A
530 545Right-handed alpha
Helix 17
AB8
A
548 562Right-handed alpha
Helix 18
AB9
A
564 579Right-handed alpha
Helix 19
AC1
A
582 597Right-handed alpha
Helix 20
AC2
A
598 617Right-handed alpha
Helix 21
AC3
A
691 710Right-handed alpha
Helix 22
AC4
A
711 726Right-handed alpha
Helix 23
AC5
A
729 744Right-handed alpha
Helix 24
AC6
A
745 760Right-handed alpha
Helix 25
AC7
A
763 778Right-handed alpha
Helix 26
AC8
A
779 794Right-handed alpha
Helix 27
AC9
A
797 812Right-handed alpha
Helix 28
AD1
A
813 830Right-handed alpha
Helix 29
AD2
A
835 839Right-handed 310
Helix 30
AD3
B
8 15Right-handed alpha
Helix 31
AD4
B
37 47Right-handed alpha
Helix 32
AD5
B
54 66Right-handed alpha
Helix 33
AD6
B
68 77Right-handed alpha
Helix 34
AD7
B
78 92Right-handed alpha
Helix 35
AD8
B
100 113Right-handed alpha
Helix 36
AD9
B
175 191Right-handed alpha
Helix 37
AE1
B
196 213Right-handed alpha
Helix 38
AE2
B
216 222Right-handed alpha
Helix 39
AE3
B
233 249Right-handed alpha
Helix 40
AE4
B
252 270Right-handed alpha
Helix 41
AE5
B
272 286Right-handed alpha
Helix 42
AE6
C
9 20Right-handed alpha
Helix 43
AE7
C
25 33Right-handed alpha
Helix 44
AE8
C
42 60Right-handed alpha
Helix 45
AE9
C
72 89Right-handed alpha
Helix 46
AF1
C
92 111Right-handed alpha
Helix 47
AF2
C
112 124Right-handed alpha
Helix 48
AF3
C
125 128Right-handed 310
Helix 49
AF4
C
134 155Right-handed alpha
Helix 50
AF5
C
168 196Right-handed alpha
Helix 51
AF6
C
215 232Right-handed alpha
Helix 52
AF7
C
234 248Right-handed alpha
Helix 53
AF8
C
254 272Right-handed alpha
Helix 54
AF9
C
274 278Right-handed 310
Helix 55
AG1
C
323 340Right-handed alpha
Helix 56
AG2
C
360 375Right-handed alpha
Helix 57
AG3
C
378 390Right-handed alpha
Helix 58
AG4
C
391 393Right-handed 310
Helix 59
AG5
C
396 410Right-handed alpha
Helix 60
AG6
C
412 427Right-handed alpha
Helix 61
AG7
C
431 442Right-handed alpha
Helix 62
AG8
C
447 461Right-handed alpha
Helix 63
AG9
C
467 487Right-handed alpha
Helix 64
AH1
C
489 511Right-handed alpha
Helix 65
AH2
C
514 528Right-handed alpha
Helix 66
AH3
C
530 545Right-handed alpha
Helix 67
AH4
C
548 562Right-handed alpha
Helix 68
AH5
C
564 579Right-handed alpha
Helix 69
AH6
C
582 597Right-handed alpha
Helix 70
AH7
C
598 617Right-handed alpha
Helix 71
AH8
C
689 710Right-handed alpha
Helix 72
AH9
C
711 724Right-handed alpha
Helix 73
AI1
C
729 744Right-handed alpha
Helix 74
AI2
C
745 760Right-handed alpha
Helix 75
AI3
C
763 777Right-handed alpha
Helix 76
AI4
C
779 794Right-handed alpha
Helix 77
AI5
C
797 812Right-handed alpha
Helix 78
AI6
C
813 829Right-handed alpha
Helix 79
AI7
C
835 839Right-handed 310
Helix 80
AI8
D
8 17Right-handed alpha
Helix 81
AI9
D
25 29Right-handed alpha
Helix 82
AJ1
D
35 47Right-handed alpha
Helix 83
AJ2
D
52 66Right-handed alpha
Helix 84
AJ3
D
68 77Right-handed alpha
Helix 85
AJ4
D
78 91Right-handed alpha
Helix 86
AJ5
D
99 115Right-handed alpha
Helix 87
AJ6
D
143 148Right-handed alpha
Helix 88
AJ7
D
176 191Right-handed alpha
Helix 89
AJ8
D
192 195Right-handed 310
Helix 90
AJ9
D
196 213Right-handed alpha
Helix 91
AK1
D
216 222Right-handed alpha
Helix 92
AK2
D
233 249Right-handed alpha
Helix 93
AK3
D
252 271Right-handed alpha
Helix 94
AK4
D
272 286Right-handed alpha
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There are 2 sheets in PDB entry 5DSE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 126first strand
Strand 2
B
159 163anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 126first strand
Strand 2
D
159 163anti-parallel
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