Analysis of interatomic Contacts of Structural Units in PDB entry:
5DSG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DSG entry

There are 2 chains in PDB entry 5DSG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 20CYS 470
B
 HIS 24ARG 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5DSG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 60Right-handed alpha
Helix 2
AA2
A
61 64Right-handed 310
Helix 3
AA3
A
65 84Right-handed alpha
Helix 4
AA4
A
84 96Right-handed alpha
Helix 5
AA5
A
100 136Right-handed alpha
Helix 6
AA6
A
140 144Right-handed 310
Helix 7
AA7
A
145 170Right-handed alpha
Helix 8
AA8
A
170 176Right-handed alpha
Helix 9
AA9
A
187 191Right-handed 310
Helix 10
AB1
A
192 204Right-handed alpha
Helix 11
AB2
A
204 221Right-handed alpha
Helix 12
AB3
A
225 1011Right-handed alpha
Helix 13
AB4
A
1020 1038Right-handed alpha
Helix 14
AB5
A
1040 1047Right-handed alpha
Helix 15
AB6
A
1049 1070Right-handed alpha
Helix 16
AB7
A
1071 1080Right-handed alpha
Helix 17
AB8
A
1082 1091Right-handed alpha
Helix 18
AB9
A
1093 1099Right-handed alpha
Helix 19
AC1
A
1099 1113Right-handed alpha
Helix 20
AC2
A
397 423Right-handed alpha
Helix 21
AC3
A
431 457Right-handed alpha
Helix 22
AC4
A
457 469Right-handed alpha
Helix 23
AC5
B
26 60Right-handed alpha
Helix 24
AC6
B
61 64Right-handed 310
Helix 25
AC7
B
65 84Right-handed alpha
Helix 26
AC8
B
84 96Right-handed alpha
Helix 27
AC9
B
100 136Right-handed alpha
Helix 28
AD1
B
145 170Right-handed alpha
Helix 29
AD2
B
170 176Right-handed alpha
Helix 30
AD3
B
187 191Right-handed 310
Helix 31
AD4
B
192 204Right-handed alpha
Helix 32
AD5
B
204 222Right-handed alpha
Helix 33
AD6
B
1002 1010Right-handed alpha
Helix 34
AD7
B
1020 1038Right-handed alpha
Helix 35
AD8
B
1040 1047Right-handed alpha
Helix 36
AD9
B
1049 1064Right-handed alpha
Helix 37
AE1
B
1064 1070Right-handed alpha
Helix 38
AE2
B
1071 1080Right-handed alpha
Helix 39
AE3
B
1082 1092Right-handed alpha
Helix 40
AE4
B
1094 1099Right-handed alpha
Helix 41
AE5
B
1099 1113Right-handed alpha
Helix 42
AE6
B
392 423Right-handed alpha
Helix 43
AE7
B
431 442Right-handed alpha
Helix 44
AE8
B
443 457Right-handed alpha
Helix 45
AE9
B
458 469Right-handed alpha
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There are no sheets in PDB entry 5DSG
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il