Analysis of interatomic Contacts of Structural Units in PDB entry:
5DSV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DSV entry

There are 14 chains in PDB entry 5DSV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLU 245
B	SER 1	GLU 245
C	SER 1	GLU 245
D	SER 2	GLU 245
E	SER 1	GLU 245
F	SER 2	GLU 245
G	GLY 4	GLU 245
H	SER 1	LYS 244
I	SER 1	LYS 244
J	SER 1	GLU 245
K	SER 1	LYS 244
L	SER 1	GLU 245
M	SER 1	LEU 243
N	SER 2	GLU 245

There are106 helices in PDB entry 5DSV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	32	Right-handed alpha
Helix 2	AA2	A	80	103	Right-handed alpha
Helix 3	AA3	A	107	121	Right-handed alpha
Helix 4	AA4	A	168	179	Right-handed alpha
Helix 5	AA5	A	185	201	Right-handed alpha
Helix 6	AA6	A	219	221	Right-handed 310
Helix 7	AA7	A	228	244	Right-handed alpha
Helix 8	AA8	B	20	32	Right-handed alpha
Helix 9	AA9	B	80	103	Right-handed alpha
Helix 10	AB1	B	107	121	Right-handed alpha
Helix 11	AB2	B	122	124	Right-handed 310
Helix 12	AB3	B	168	179	Right-handed alpha
Helix 13	AB4	B	185	201	Right-handed alpha
Helix 14	AB5	B	219	221	Right-handed 310
Helix 15	AB6	B	228	244	Right-handed alpha
Helix 16	AB7	C	20	32	Right-handed alpha
Helix 17	AB8	C	80	103	Right-handed alpha
Helix 18	AB9	C	107	121	Right-handed alpha
Helix 19	AC1	C	168	179	Right-handed alpha
Helix 20	AC2	C	185	201	Right-handed alpha
Helix 21	AC3	C	217	221	Right-handed 310
Helix 22	AC4	C	228	244	Right-handed alpha
Helix 23	AC5	D	20	32	Right-handed alpha
Helix 24	AC6	D	80	103	Right-handed alpha
Helix 25	AC7	D	107	121	Right-handed alpha
Helix 26	AC8	D	168	179	Right-handed alpha
Helix 27	AC9	D	185	201	Right-handed alpha
Helix 28	AD1	D	219	221	Right-handed 310
Helix 29	AD2	D	228	244	Right-handed alpha
Helix 30	AD3	E	20	32	Right-handed alpha
Helix 31	AD4	E	80	103	Right-handed alpha
Helix 32	AD5	E	107	121	Right-handed alpha
Helix 33	AD6	E	122	124	Right-handed 310
Helix 34	AD7	E	168	179	Right-handed alpha
Helix 35	AD8	E	185	201	Right-handed alpha
Helix 36	AD9	E	219	221	Right-handed 310
Helix 37	AE1	E	228	244	Right-handed alpha
Helix 38	AE2	F	20	32	Right-handed alpha
Helix 39	AE3	F	80	103	Right-handed alpha
Helix 40	AE4	F	107	122	Right-handed alpha
Helix 41	AE5	F	168	179	Right-handed alpha
Helix 42	AE6	F	185	201	Right-handed alpha
Helix 43	AE7	F	219	221	Right-handed 310
Helix 44	AE8	F	228	244	Right-handed alpha
Helix 45	AE9	G	20	32	Right-handed alpha
Helix 46	AF1	G	80	103	Right-handed alpha
Helix 47	AF2	G	107	121	Right-handed alpha
Helix 48	AF3	G	168	179	Right-handed alpha
Helix 49	AF4	G	185	201	Right-handed alpha
Helix 50	AF5	G	219	221	Right-handed 310
Helix 51	AF6	G	228	244	Right-handed alpha
Helix 52	AF7	H	20	32	Right-handed alpha
Helix 53	AF8	H	80	103	Right-handed alpha
Helix 54	AF9	H	107	121	Right-handed alpha
Helix 55	AG1	H	122	124	Right-handed 310
Helix 56	AG2	H	168	179	Right-handed alpha
Helix 57	AG3	H	185	201	Right-handed alpha
Helix 58	AG4	H	219	221	Right-handed 310
Helix 59	AG5	H	228	244	Right-handed alpha
Helix 60	AG6	I	20	32	Right-handed alpha
Helix 61	AG7	I	80	103	Right-handed alpha
Helix 62	AG8	I	107	121	Right-handed alpha
Helix 63	AG9	I	122	124	Right-handed 310
Helix 64	AH1	I	168	179	Right-handed alpha
Helix 65	AH2	I	185	201	Right-handed alpha
Helix 66	AH3	I	219	221	Right-handed 310
Helix 67	AH4	I	228	244	Right-handed alpha
Helix 68	AH5	J	20	32	Right-handed alpha
Helix 69	AH6	J	80	103	Right-handed alpha
Helix 70	AH7	J	107	121	Right-handed alpha
Helix 71	AH8	J	122	124	Right-handed 310
Helix 72	AH9	J	168	179	Right-handed alpha
Helix 73	AI1	J	185	201	Right-handed alpha
Helix 74	AI2	J	219	221	Right-handed 310
Helix 75	AI3	J	228	244	Right-handed alpha
Helix 76	AI4	K	20	32	Right-handed alpha
Helix 77	AI5	K	80	103	Right-handed alpha
Helix 78	AI6	K	107	121	Right-handed alpha
Helix 79	AI7	K	168	179	Right-handed alpha
Helix 80	AI8	K	185	201	Right-handed alpha
Helix 81	AI9	K	219	221	Right-handed 310
Helix 82	AJ1	K	228	244	Right-handed alpha
Helix 83	AJ2	L	20	32	Right-handed alpha
Helix 84	AJ3	L	80	103	Right-handed alpha
Helix 85	AJ4	L	107	121	Right-handed alpha
Helix 86	AJ5	L	122	124	Right-handed 310
Helix 87	AJ6	L	168	179	Right-handed alpha
Helix 88	AJ7	L	185	201	Right-handed alpha
Helix 89	AJ8	L	219	221	Right-handed 310
Helix 90	AJ9	L	228	244	Right-handed alpha
Helix 91	AK1	M	20	32	Right-handed alpha
Helix 92	AK2	M	80	103	Right-handed alpha
Helix 93	AK3	M	107	121	Right-handed alpha
Helix 94	AK4	M	122	124	Right-handed 310
Helix 95	AK5	M	168	179	Right-handed alpha
Helix 96	AK6	M	185	201	Right-handed alpha
Helix 97	AK7	M	219	221	Right-handed 310
Helix 98	AK8	M	228	243	Right-handed alpha
Helix 99	AK9	N	20	32	Right-handed alpha
Helix 100	AL1	N	80	103	Right-handed alpha
Helix 101	AL2	N	107	121	Right-handed alpha
Helix 102	AL3	N	122	124	Right-handed 310
Helix 103	AL4	N	168	179	Right-handed alpha
Helix 104	AL5	N	185	201	Right-handed alpha
Helix 105	AL6	N	219	221	Right-handed 310
Helix 106	AL7	N	228	244	Right-handed alpha

There are 28 sheets in PDB entry 5DSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	36	40	anti-parallel
Strand 3	A	44	49	anti-parallel
Strand 4	A	212	217	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	73	79	anti-parallel
Strand 3	A	133	141	anti-parallel
Strand 4	A	145	151	anti-parallel
Strand 5	A	157	159	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	36	39	anti-parallel
Strand 3	B	44	49	anti-parallel
Strand 4	B	212	217	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	73	79	anti-parallel
Strand 3	B	133	141	anti-parallel
Strand 4	B	145	151	anti-parallel
Strand 5	B	157	159	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	36	39	anti-parallel
Strand 3	C	45	49	anti-parallel
Strand 4	C	213	216	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	73	79	anti-parallel
Strand 3	C	133	141	anti-parallel
Strand 4	C	145	151	anti-parallel
Strand 5	C	157	159	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	36	40	anti-parallel
Strand 3	D	44	49	anti-parallel
Strand 4	D	212	217	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	68	first strand
Strand 2	D	73	79	anti-parallel
Strand 3	D	133	141	anti-parallel
Strand 4	D	145	151	anti-parallel
Strand 5	D	157	159	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	165	first strand
Strand 2	E	36	40	anti-parallel
Strand 3	E	44	49	anti-parallel
Strand 4	E	212	217	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	68	first strand
Strand 2	E	73	79	anti-parallel
Strand 3	E	133	141	anti-parallel
Strand 4	E	145	151	anti-parallel
Strand 5	E	157	159	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	36	40	anti-parallel
Strand 3	F	44	49	anti-parallel
Strand 4	F	212	217	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	68	first strand
Strand 2	F	73	79	anti-parallel
Strand 3	F	133	141	anti-parallel
Strand 4	F	145	151	anti-parallel
Strand 5	F	157	159	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	165	first strand
Strand 2	G	36	40	anti-parallel
Strand 3	G	44	49	anti-parallel
Strand 4	G	212	217	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	68	first strand
Strand 2	G	73	79	anti-parallel
Strand 3	G	133	141	anti-parallel
Strand 4	G	145	151	anti-parallel
Strand 5	G	157	159	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	165	first strand
Strand 2	H	36	40	anti-parallel
Strand 3	H	44	49	anti-parallel
Strand 4	H	212	217	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	68	first strand
Strand 2	H	73	79	anti-parallel
Strand 3	H	133	141	anti-parallel
Strand 4	H	145	151	anti-parallel
Strand 5	H	157	159	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	162	165	first strand
Strand 2	I	36	40	anti-parallel
Strand 3	I	44	49	anti-parallel
Strand 4	I	212	217	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	68	first strand
Strand 2	I	73	79	anti-parallel
Strand 3	I	133	141	anti-parallel
Strand 4	I	145	151	anti-parallel
Strand 5	I	157	159	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	162	165	first strand
Strand 2	J	36	40	anti-parallel
Strand 3	J	44	49	anti-parallel
Strand 4	J	212	217	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	66	68	first strand
Strand 2	J	73	79	anti-parallel
Strand 3	J	133	141	anti-parallel
Strand 4	J	145	151	anti-parallel
Strand 5	J	157	159	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	162	165	first strand
Strand 2	K	36	40	anti-parallel
Strand 3	K	44	49	anti-parallel
Strand 4	K	212	217	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	66	68	first strand
Strand 2	K	73	79	anti-parallel
Strand 3	K	133	141	anti-parallel
Strand 4	K	145	151	anti-parallel
Strand 5	K	157	159	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	162	165	first strand
Strand 2	L	36	40	anti-parallel
Strand 3	L	44	49	anti-parallel
Strand 4	L	212	217	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	68	first strand
Strand 2	L	73	79	anti-parallel
Strand 3	L	133	141	anti-parallel
Strand 4	L	145	151	anti-parallel
Strand 5	L	157	159	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	162	165	first strand
Strand 2	M	36	40	anti-parallel
Strand 3	M	44	49	anti-parallel
Strand 4	M	212	217	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	66	68	first strand
Strand 2	M	73	79	anti-parallel
Strand 3	M	133	141	anti-parallel
Strand 4	M	145	151	anti-parallel
Strand 5	M	157	159	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	162	165	first strand
Strand 2	N	36	40	anti-parallel
Strand 3	N	44	49	anti-parallel
Strand 4	N	212	217	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	66	68	first strand
Strand 2	N	73	79	anti-parallel
Strand 3	N	133	141	anti-parallel
Strand 4	N	145	151	anti-parallel
Strand 5	N	157	159	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DSV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DSV