Analysis of interatomic Contacts of Structural Units in PDB entry:
5DSY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DSY entry

There are 4 chains in PDB entry 5DSY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 217	GLN 568
B	PRO 217	TRP 570
C	PRO 217	GLN 568
D	PRO 217	GLN 568

There are 43 helices in PDB entry 5DSY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	222	233	Right-handed alpha
Helix 2	AA2	A	343	351	Right-handed alpha
Helix 3	AA3	A	363	376	Right-handed alpha
Helix 4	AA4	A	398	403	Right-handed alpha
Helix 5	AA5	A	418	420	Right-handed 310
Helix 6	AA6	A	421	429	Right-handed alpha
Helix 7	AA7	A	453	459	Right-handed alpha
Helix 8	AA8	A	493	497	Right-handed 310
Helix 9	AA9	A	512	515	Right-handed 310
Helix 10	AB1	A	550	552	Right-handed 310
Helix 11	AB2	B	222	233	Right-handed alpha
Helix 12	AB3	B	343	351	Right-handed alpha
Helix 13	AB4	B	363	376	Right-handed alpha
Helix 14	AB5	B	398	403	Right-handed alpha
Helix 15	AB6	B	418	420	Right-handed 310
Helix 16	AB7	B	421	429	Right-handed alpha
Helix 17	AB8	B	453	459	Right-handed alpha
Helix 18	AB9	B	460	462	Right-handed 310
Helix 19	AC1	B	493	497	Right-handed 310
Helix 20	AC2	B	512	515	Right-handed 310
Helix 21	AC3	B	550	552	Right-handed 310
Helix 22	AC4	C	222	234	Right-handed alpha
Helix 23	AC5	C	343	351	Right-handed alpha
Helix 24	AC6	C	363	376	Right-handed alpha
Helix 25	AC7	C	398	403	Right-handed alpha
Helix 26	AC8	C	418	420	Right-handed 310
Helix 27	AC9	C	421	429	Right-handed alpha
Helix 28	AD1	C	453	459	Right-handed alpha
Helix 29	AD2	C	460	462	Right-handed 310
Helix 30	AD3	C	489	497	Right-handed 310
Helix 31	AD4	C	512	515	Right-handed 310
Helix 32	AD5	C	550	552	Right-handed 310
Helix 33	AD6	D	222	233	Right-handed alpha
Helix 34	AD7	D	343	351	Right-handed alpha
Helix 35	AD8	D	363	376	Right-handed alpha
Helix 36	AD9	D	398	403	Right-handed alpha
Helix 37	AE1	D	418	420	Right-handed 310
Helix 38	AE2	D	421	429	Right-handed alpha
Helix 39	AE3	D	453	459	Right-handed alpha
Helix 40	AE4	D	460	462	Right-handed 310
Helix 41	AE5	D	493	497	Right-handed 310
Helix 42	AE6	D	511	515	Right-handed 310
Helix 43	AE7	D	550	552	Right-handed 310

There are 16 sheets in PDB entry 5DSY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	384	396	anti-parallel
Strand 3	A	554	566	anti-parallel
Strand 4	A	469	478	anti-parallel
Strand 5	A	410	416	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	545	548	anti-parallel
Strand 3	A	501	504	anti-parallel
Strand 4	A	482	485	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	530	first strand
Strand 2	A	506	510	anti-parallel
Strand 3	A	541	543	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	518	first strand
Strand 2	A	521	523	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	384	396	anti-parallel
Strand 3	B	554	566	anti-parallel
Strand 4	B	469	478	anti-parallel
Strand 5	B	410	416	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	450	first strand
Strand 2	B	545	548	anti-parallel
Strand 3	B	501	504	anti-parallel
Strand 4	B	482	485	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	528	530	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	518	first strand
Strand 2	B	521	523	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	384	396	anti-parallel
Strand 3	C	554	566	anti-parallel
Strand 4	C	469	478	anti-parallel
Strand 5	C	410	416	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	450	first strand
Strand 2	C	545	548	anti-parallel
Strand 3	C	501	504	anti-parallel
Strand 4	C	482	485	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	530	first strand
Strand 2	C	506	510	anti-parallel
Strand 3	C	541	543	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	516	518	first strand
Strand 2	C	521	523	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	359	first strand
Strand 2	D	384	396	anti-parallel
Strand 3	D	554	566	anti-parallel
Strand 4	D	469	478	anti-parallel
Strand 5	D	410	416	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	448	451	first strand
Strand 2	D	545	548	anti-parallel
Strand 3	D	501	504	anti-parallel
Strand 4	D	482	485	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	530	first strand
Strand 2	D	506	509	anti-parallel
Strand 3	D	541	543	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	516	518	first strand
Strand 2	D	521	523	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DSY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DSY