Analysis of interatomic Contacts of Structural Units in PDB entry:
5DSZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DSZ entry

There are 2 chains in PDB entry 5DSZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ILE 415
B	ALA 2	ILE 415

There are 20 helices in PDB entry 5DSZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	31	Right-handed alpha
Helix 2	AA2	A	74	78	Right-handed 310
Helix 3	AA3	A	102	109	Right-handed alpha
Helix 4	AA4	A	126	140	Right-handed alpha
Helix 5	AA5	A	151	154	Right-handed 310
Helix 6	AA6	A	155	171	Right-handed alpha
Helix 7	AA7	A	190	202	Right-handed alpha
Helix 8	AA8	A	229	233	Right-handed 310
Helix 9	AA9	A	302	307	Right-handed alpha
Helix 10	AB1	A	308	310	Right-handed 310
Helix 11	AB2	B	20	31	Right-handed alpha
Helix 12	AB3	B	74	78	Right-handed 310
Helix 13	AB4	B	102	111	Right-handed alpha
Helix 14	AB5	B	126	139	Right-handed alpha
Helix 15	AB6	B	150	154	Right-handed 310
Helix 16	AB7	B	155	171	Right-handed alpha
Helix 17	AB8	B	190	202	Right-handed alpha
Helix 18	AB9	B	229	233	Right-handed 310
Helix 19	AC1	B	302	307	Right-handed alpha
Helix 20	AC2	B	308	310	Right-handed 310

There are 10 sheets in PDB entry 5DSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	51	58	anti-parallel
Strand 3	A	84	93	anti-parallel
Strand 4	A	11	16	parallel
Strand 5	A	113	119	parallel
Strand 6	A	144	149	parallel
Strand 7	A	180	183	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	275	first strand
Strand 2	A	252	261	anti-parallel
Strand 3	A	315	318	anti-parallel
Strand 4	A	214	221	anti-parallel
Strand 5	A	236	244	anti-parallel
Strand 6	A	295	301	anti-parallel
Strand 7	A	278	281	anti-parallel
Strand 8	A	284	286	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	248	first strand
Strand 2	A	288	289	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	335	first strand
Strand 2	A	377	387	anti-parallel
Strand 3	A	364	373	anti-parallel
Strand 4	A	356	361	anti-parallel
Strand 5	A	393	401	anti-parallel
Strand 6	A	404	413	anti-parallel
Strand 7	A	325	335	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	346	347	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	51	58	anti-parallel
Strand 3	B	84	92	anti-parallel
Strand 4	B	10	16	parallel
Strand 5	B	113	119	parallel
Strand 6	B	144	149	parallel
Strand 7	B	180	182	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	286	first strand
Strand 2	B	268	281	anti-parallel
Strand 3	B	295	299	anti-parallel
Strand 4	B	237	244	anti-parallel
Strand 5	B	214	221	anti-parallel
Strand 6	B	315	318	anti-parallel
Strand 7	B	252	261	anti-parallel
Strand 8	B	268	281	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	248	first strand
Strand 2	B	288	289	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	335	first strand
Strand 2	B	377	387	anti-parallel
Strand 3	B	364	373	anti-parallel
Strand 4	B	356	361	anti-parallel
Strand 5	B	393	400	anti-parallel
Strand 6	B	405	414	anti-parallel
Strand 7	B	325	335	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	346	347	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DSZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DSZ