Analysis of interatomic Contacts of Structural Units in PDB entry:
5DT5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DT5 entry

There are 3 chains in PDB entry 5DT5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	PRO 445
B	MET 1	LYS 441
C	PHE 3	TYR 347

There are152 helices in PDB entry 5DT5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	19	Right-handed alpha
Helix 2	AA2	A	30	38	Right-handed alpha
Helix 3	AA3	A	42	46	Right-handed 310
Helix 4	AA4	A	57	69	Right-handed alpha
Helix 5	AA5	A	78	83	Right-handed alpha
Helix 6	AA6	A	90	107	Right-handed alpha
Helix 7	AA7	A	121	126	Right-handed alpha
Helix 8	AA8	A	127	133	Right-handed 310
Helix 9	AA9	A	134	151	Right-handed alpha
Helix 10	AB1	A	162	172	Right-handed alpha
Helix 11	AB2	A	182	207	Right-handed alpha
Helix 12	AB3	A	229	244	Right-handed alpha
Helix 13	AB4	A	244	253	Right-handed alpha
Helix 14	AB5	A	257	265	Right-handed alpha
Helix 15	AB6	A	277	283	Right-handed alpha
Helix 16	AB7	A	326	341	Right-handed alpha
Helix 17	AB8	A	366	387	Right-handed alpha
Helix 18	AB9	A	403	410	Right-handed 310
Helix 19	AC1	A	427	444	Right-handed alpha
Helix 20	AC2	B	14	19	Right-handed alpha
Helix 21	AC3	B	30	38	Right-handed alpha
Helix 22	AC4	B	42	46	Right-handed 310
Helix 23	AC5	B	57	69	Right-handed alpha
Helix 24	AC6	B	78	83	Right-handed alpha
Helix 25	AC7	B	90	107	Right-handed alpha
Helix 26	AC8	B	121	127	Right-handed alpha
Helix 27	AC9	B	128	133	Right-handed 310
Helix 28	AD1	B	134	151	Right-handed alpha
Helix 29	AD2	B	162	172	Right-handed alpha
Helix 30	AD3	B	182	207	Right-handed alpha
Helix 31	AD4	B	229	244	Right-handed alpha
Helix 32	AD5	B	244	253	Right-handed alpha
Helix 33	AD6	B	257	265	Right-handed alpha
Helix 34	AD7	B	277	283	Right-handed alpha
Helix 35	AD8	B	326	341	Right-handed alpha
Helix 36	AD9	B	366	386	Right-handed alpha
Helix 37	AE1	B	403	410	Right-handed 310
Helix 38	AE2	B	427	441	Right-handed alpha
Helix 39	AE3	C	14	19	Right-handed alpha
Helix 40	AE4	C	30	37	Right-handed alpha
Helix 41	AE5	C	42	46	Right-handed 310
Helix 42	AE6	C	53	69	Right-handed alpha
Helix 43	AE7	C	78	83	Right-handed alpha
Helix 44	AE8	C	90	107	Right-handed alpha
Helix 45	AE9	C	121	127	Right-handed alpha
Helix 46	AF1	C	128	133	Right-handed 310
Helix 47	AF2	C	134	151	Right-handed alpha
Helix 48	AF3	C	162	172	Right-handed alpha
Helix 49	AF4	C	182	206	Right-handed alpha
Helix 50	AF5	C	229	244	Right-handed alpha
Helix 51	AF6	C	244	254	Right-handed alpha
Helix 52	AF7	C	257	265	Right-handed alpha
Helix 53	AF8	C	277	283	Right-handed alpha
Helix 54	AF9	C	326	341	Right-handed alpha
Helix 55	AG1	C	366	386	Right-handed alpha
Helix 56	AG2	C	403	407	Right-handed 310
Helix 57	AG3	C	427	444	Right-handed alpha
Helix 58	AG4	D	14	19	Right-handed alpha
Helix 59	AG5	D	30	38	Right-handed alpha
Helix 60	AG6	D	42	46	Right-handed 310
Helix 61	AG7	D	53	69	Right-handed alpha
Helix 62	AG8	D	78	83	Right-handed alpha
Helix 63	AG9	D	90	107	Right-handed alpha
Helix 64	AH1	D	121	127	Right-handed alpha
Helix 65	AH2	D	128	133	Right-handed 310
Helix 66	AH3	D	134	151	Right-handed alpha
Helix 67	AH4	D	162	172	Right-handed alpha
Helix 68	AH5	D	182	207	Right-handed alpha
Helix 69	AH6	D	229	244	Right-handed alpha
Helix 70	AH7	D	244	254	Right-handed alpha
Helix 71	AH8	D	257	265	Right-handed alpha
Helix 72	AH9	D	277	283	Right-handed alpha
Helix 73	AI1	D	326	341	Right-handed alpha
Helix 74	AI2	D	366	386	Right-handed alpha
Helix 75	AI3	D	403	407	Right-handed 310
Helix 76	AI4	D	427	444	Right-handed alpha
Helix 77	AI5	E	14	19	Right-handed alpha
Helix 78	AI6	E	30	38	Right-handed alpha
Helix 79	AI7	E	42	46	Right-handed 310
Helix 80	AI8	E	53	69	Right-handed alpha
Helix 81	AI9	E	78	83	Right-handed alpha
Helix 82	AJ1	E	90	107	Right-handed alpha
Helix 83	AJ2	E	121	127	Right-handed alpha
Helix 84	AJ3	E	128	133	Right-handed 310
Helix 85	AJ4	E	134	151	Right-handed alpha
Helix 86	AJ5	E	162	172	Right-handed alpha
Helix 87	AJ6	E	182	206	Right-handed alpha
Helix 88	AJ7	E	229	244	Right-handed alpha
Helix 89	AJ8	E	244	254	Right-handed alpha
Helix 90	AJ9	E	257	265	Right-handed alpha
Helix 91	AK1	E	277	283	Right-handed alpha
Helix 92	AK2	E	326	341	Right-handed alpha
Helix 93	AK3	E	366	385	Right-handed alpha
Helix 94	AK4	E	403	407	Right-handed 310
Helix 95	AK5	E	427	439	Right-handed alpha
Helix 96	AK6	F	14	19	Right-handed alpha
Helix 97	AK7	F	30	38	Right-handed alpha
Helix 98	AK8	F	42	46	Right-handed 310
Helix 99	AK9	F	57	69	Right-handed alpha
Helix 100	AL1	F	78	83	Right-handed alpha
Helix 101	AL2	F	90	107	Right-handed alpha
Helix 102	AL3	F	121	126	Right-handed alpha
Helix 103	AL4	F	127	133	Right-handed 310
Helix 104	AL5	F	134	151	Right-handed alpha
Helix 105	AL6	F	162	172	Right-handed alpha
Helix 106	AL7	F	182	207	Right-handed alpha
Helix 107	AL8	F	229	244	Right-handed alpha
Helix 108	AL9	F	244	254	Right-handed alpha
Helix 109	AM1	F	257	265	Right-handed alpha
Helix 110	AM2	F	277	283	Right-handed alpha
Helix 111	AM3	F	326	341	Right-handed alpha
Helix 112	AM4	F	366	386	Right-handed alpha
Helix 113	AM5	F	403	410	Right-handed 310
Helix 114	AM6	F	427	441	Right-handed alpha
Helix 115	AM7	G	14	19	Right-handed alpha
Helix 116	AM8	G	30	38	Right-handed alpha
Helix 117	AM9	G	42	46	Right-handed 310
Helix 118	AN1	G	53	69	Right-handed alpha
Helix 119	AN2	G	78	83	Right-handed alpha
Helix 120	AN3	G	90	107	Right-handed alpha
Helix 121	AN4	G	121	127	Right-handed alpha
Helix 122	AN5	G	128	132	Right-handed 310
Helix 123	AN6	G	133	151	Right-handed alpha
Helix 124	AN7	G	162	172	Right-handed alpha
Helix 125	AN8	G	182	207	Right-handed alpha
Helix 126	AN9	G	229	244	Right-handed alpha
Helix 127	AO1	G	244	253	Right-handed alpha
Helix 128	AO2	G	257	265	Right-handed alpha
Helix 129	AO3	G	277	283	Right-handed alpha
Helix 130	AO4	G	326	341	Right-handed alpha
Helix 131	AO5	G	366	386	Right-handed alpha
Helix 132	AO6	G	403	410	Right-handed 310
Helix 133	AO7	G	427	441	Right-handed alpha
Helix 134	AO8	H	14	19	Right-handed alpha
Helix 135	AO9	H	30	38	Right-handed alpha
Helix 136	AP1	H	42	46	Right-handed 310
Helix 137	AP2	H	53	69	Right-handed alpha
Helix 138	AP3	H	78	82	Right-handed 310
Helix 139	AP4	H	90	107	Right-handed alpha
Helix 140	AP5	H	121	127	Right-handed alpha
Helix 141	AP6	H	128	133	Right-handed 310
Helix 142	AP7	H	134	151	Right-handed alpha
Helix 143	AP8	H	162	172	Right-handed alpha
Helix 144	AP9	H	182	207	Right-handed alpha
Helix 145	AQ1	H	229	244	Right-handed alpha
Helix 146	AQ2	H	244	254	Right-handed alpha
Helix 147	AQ3	H	257	265	Right-handed alpha
Helix 148	AQ4	H	277	283	Right-handed alpha
Helix 149	AQ5	H	326	341	Right-handed alpha
Helix 150	AQ6	H	366	386	Right-handed alpha
Helix 151	AQ7	H	403	407	Right-handed 310
Helix 152	AQ8	H	427	444	Right-handed alpha

There are 31 sheets in PDB entry 5DT5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	12	first strand
Strand 2	A	72	76	parallel
Strand 3	A	110	116	parallel
Strand 4	A	156	161	parallel
Strand 5	A	214	219	parallel
Strand 6	A	289	292	parallel
Strand 7	A	346	351	parallel
Strand 8	A	390	396	parallel
Strand 9	A	8	12	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	297	301	parallel
Strand 3	A	309	311	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	417	first strand
Strand 2	A	424	426	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	72	76	parallel
Strand 3	B	110	116	parallel
Strand 4	B	156	161	parallel
Strand 5	B	214	219	parallel
Strand 6	B	289	292	parallel
Strand 7	B	346	351	parallel
Strand 8	B	390	396	parallel
Strand 9	B	8	12	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	297	301	parallel
Strand 3	B	309	311	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	363	364	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	418	first strand
Strand 2	B	423	426	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	12	first strand
Strand 2	C	72	76	parallel
Strand 3	C	110	116	parallel
Strand 4	C	156	161	parallel
Strand 5	C	214	219	parallel
Strand 6	C	289	292	parallel
Strand 7	C	346	351	parallel
Strand 8	C	390	396	parallel
Strand 9	C	8	12	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	225	first strand
Strand 2	C	297	301	parallel
Strand 3	C	309	311	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	360	first strand
Strand 2	C	363	364	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	418	first strand
Strand 2	C	423	426	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	12	first strand
Strand 2	D	72	76	parallel
Strand 3	D	110	116	parallel
Strand 4	D	156	161	parallel
Strand 5	D	214	219	parallel
Strand 6	D	289	292	parallel
Strand 7	D	346	351	parallel
Strand 8	D	390	396	parallel
Strand 9	D	8	12	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	225	first strand
Strand 2	D	297	301	parallel
Strand 3	D	309	311	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	360	first strand
Strand 2	D	363	364	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	415	417	first strand
Strand 2	D	424	426	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	12	first strand
Strand 2	E	72	76	parallel
Strand 3	E	110	116	parallel
Strand 4	E	156	161	parallel
Strand 5	E	214	220	parallel
Strand 6	E	289	293	parallel
Strand 7	E	346	351	parallel
Strand 8	E	390	396	parallel
Strand 9	E	8	12	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	225	first strand
Strand 2	E	297	301	parallel
Strand 3	E	309	311	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	359	360	first strand
Strand 2	E	363	364	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	415	418	first strand
Strand 2	E	423	426	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	12	first strand
Strand 2	F	72	76	parallel
Strand 3	F	110	116	parallel
Strand 4	F	156	161	parallel
Strand 5	F	214	219	parallel
Strand 6	F	289	292	parallel
Strand 7	F	346	351	parallel
Strand 8	F	390	396	parallel
Strand 9	F	8	12	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	225	first strand
Strand 2	F	297	301	parallel
Strand 3	F	309	311	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	360	first strand
Strand 2	F	363	364	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	415	418	first strand
Strand 2	F	423	426	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	12	first strand
Strand 2	G	72	76	parallel
Strand 3	G	110	116	parallel
Strand 4	G	156	161	parallel
Strand 5	G	214	219	parallel
Strand 6	G	289	292	parallel
Strand 7	G	346	351	parallel
Strand 8	G	390	396	parallel
Strand 9	G	8	12	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	223	225	first strand
Strand 2	G	297	301	parallel
Strand 3	G	309	311	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	359	360	first strand
Strand 2	G	363	364	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	415	418	first strand
Strand 2	G	423	426	anti-parallel

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There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	12	first strand
Strand 2	H	72	76	parallel
Strand 3	H	110	116	parallel
Strand 4	H	156	161	parallel
Strand 5	H	214	219	parallel
Strand 6	H	289	292	parallel
Strand 7	H	346	351	parallel
Strand 8	H	390	396	parallel
Strand 9	H	8	12	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	223	225	first strand
Strand 2	H	297	301	parallel
Strand 3	H	309	311	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	359	360	first strand
Strand 2	H	363	364	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	415	418	first strand
Strand 2	H	423	426	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DT5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DT5