Analysis of interatomic Contacts of Structural Units in PDB entry:
5DT6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DT6 entry

There is 1 chain in PDB entry 5DT6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1CYS 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5DT6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 35Right-handed 310
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
78 86Right-handed alpha
Helix 4
AA4
A
99 104Right-handed alpha
Helix 5
AA5
A
129 134Right-handed alpha
Helix 6
AA6
A
147 156Right-handed alpha
Helix 7
AA7
A
158 171Right-handed alpha
Helix 8
AA8
A
172 175Right-handed 310
Helix 9
AA9
A
178 189Right-handed alpha
Helix 10
AB1
A
199 207Right-handed alpha
Helix 11
AB2
A
235 249Right-handed alpha
Helix 12
AB3
A
250 260Right-handed alpha
Helix 13
AB4
A
261 264Right-handed 310
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There are 5 sheets in PDB entry 5DT6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
8 13parallel
Strand 3
A
91 92parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
37 38anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
228 230anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
223 225anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 142first strand
Strand 2
A
193 198parallel
Strand 3
A
117 122anti-parallel
Strand 4
A
213 216anti-parallel
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