Analysis of interatomic Contacts of Structural Units in PDB entry:
5DT7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DT7 entry

There are 3 chains in PDB entry 5DT7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 3	GLN 446
B	MET 1	ALA 442
C	MET 1	LEU 344

There are 76 helices in PDB entry 5DT7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	19	Right-handed alpha
Helix 2	AA2	A	30	37	Right-handed alpha
Helix 3	AA3	A	42	46	Right-handed 310
Helix 4	AA4	A	53	69	Right-handed alpha
Helix 5	AA5	A	78	83	Right-handed alpha
Helix 6	AA6	A	90	107	Right-handed alpha
Helix 7	AA7	A	121	127	Right-handed alpha
Helix 8	AA8	A	128	132	Right-handed 310
Helix 9	AA9	A	133	151	Right-handed alpha
Helix 10	AB1	A	162	172	Right-handed alpha
Helix 11	AB2	A	182	206	Right-handed alpha
Helix 12	AB3	A	229	244	Right-handed alpha
Helix 13	AB4	A	244	254	Right-handed alpha
Helix 14	AB5	A	257	265	Right-handed alpha
Helix 15	AB6	A	277	283	Right-handed alpha
Helix 16	AB7	A	326	341	Right-handed alpha
Helix 17	AB8	A	366	386	Right-handed alpha
Helix 18	AB9	A	403	410	Right-handed 310
Helix 19	AC1	A	427	444	Right-handed alpha
Helix 20	AC2	B	14	19	Right-handed alpha
Helix 21	AC3	B	30	38	Right-handed alpha
Helix 22	AC4	B	42	46	Right-handed 310
Helix 23	AC5	B	53	69	Right-handed alpha
Helix 24	AC6	B	78	83	Right-handed alpha
Helix 25	AC7	B	90	107	Right-handed alpha
Helix 26	AC8	B	121	127	Right-handed alpha
Helix 27	AC9	B	128	133	Right-handed 310
Helix 28	AD1	B	134	151	Right-handed alpha
Helix 29	AD2	B	162	172	Right-handed alpha
Helix 30	AD3	B	182	206	Right-handed alpha
Helix 31	AD4	B	229	244	Right-handed alpha
Helix 32	AD5	B	244	254	Right-handed alpha
Helix 33	AD6	B	257	265	Right-handed alpha
Helix 34	AD7	B	277	283	Right-handed alpha
Helix 35	AD8	B	326	341	Right-handed alpha
Helix 36	AD9	B	366	386	Right-handed alpha
Helix 37	AE1	B	403	410	Right-handed 310
Helix 38	AE2	B	427	442	Right-handed alpha
Helix 39	AE3	C	14	19	Right-handed alpha
Helix 40	AE4	C	30	38	Right-handed alpha
Helix 41	AE5	C	42	46	Right-handed 310
Helix 42	AE6	C	53	69	Right-handed alpha
Helix 43	AE7	C	78	83	Right-handed alpha
Helix 44	AE8	C	90	107	Right-handed alpha
Helix 45	AE9	C	121	127	Right-handed alpha
Helix 46	AF1	C	128	133	Right-handed 310
Helix 47	AF2	C	134	151	Right-handed alpha
Helix 48	AF3	C	162	172	Right-handed alpha
Helix 49	AF4	C	182	206	Right-handed alpha
Helix 50	AF5	C	229	244	Right-handed alpha
Helix 51	AF6	C	244	254	Right-handed alpha
Helix 52	AF7	C	257	265	Right-handed alpha
Helix 53	AF8	C	277	283	Right-handed alpha
Helix 54	AF9	C	326	341	Right-handed alpha
Helix 55	AG1	C	366	386	Right-handed alpha
Helix 56	AG2	C	403	410	Right-handed 310
Helix 57	AG3	C	427	442	Right-handed alpha
Helix 58	AG4	D	14	19	Right-handed alpha
Helix 59	AG5	D	30	38	Right-handed alpha
Helix 60	AG6	D	42	46	Right-handed 310
Helix 61	AG7	D	53	69	Right-handed alpha
Helix 62	AG8	D	78	83	Right-handed alpha
Helix 63	AG9	D	90	107	Right-handed alpha
Helix 64	AH1	D	121	127	Right-handed alpha
Helix 65	AH2	D	128	133	Right-handed 310
Helix 66	AH3	D	134	151	Right-handed alpha
Helix 67	AH4	D	162	172	Right-handed alpha
Helix 68	AH5	D	182	206	Right-handed alpha
Helix 69	AH6	D	229	244	Right-handed alpha
Helix 70	AH7	D	244	254	Right-handed alpha
Helix 71	AH8	D	257	265	Right-handed alpha
Helix 72	AH9	D	277	283	Right-handed alpha
Helix 73	AI1	D	326	341	Right-handed alpha
Helix 74	AI2	D	366	386	Right-handed alpha
Helix 75	AI3	D	403	410	Right-handed 310
Helix 76	AI4	D	427	443	Right-handed alpha

There are 15 sheets in PDB entry 5DT7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	12	first strand
Strand 2	A	72	76	parallel
Strand 3	A	110	116	parallel
Strand 4	A	156	161	parallel
Strand 5	A	214	219	parallel
Strand 6	A	289	292	parallel
Strand 7	A	346	351	parallel
Strand 8	A	390	396	parallel
Strand 9	A	8	12	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	297	301	parallel
Strand 3	A	309	311	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	360	first strand
Strand 2	A	363	364	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	417	first strand
Strand 2	A	424	426	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	72	76	parallel
Strand 3	B	110	116	parallel
Strand 4	B	156	161	parallel
Strand 5	B	214	219	parallel
Strand 6	B	289	292	parallel
Strand 7	B	346	351	parallel
Strand 8	B	390	396	parallel
Strand 9	B	8	12	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	297	301	parallel
Strand 3	B	309	311	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	417	first strand
Strand 2	B	424	426	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	12	first strand
Strand 2	C	72	76	parallel
Strand 3	C	110	116	parallel
Strand 4	C	156	161	parallel
Strand 5	C	214	219	parallel
Strand 6	C	289	292	parallel
Strand 7	C	346	351	parallel
Strand 8	C	390	396	parallel
Strand 9	C	8	12	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	225	first strand
Strand 2	C	297	301	parallel
Strand 3	C	309	311	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	360	first strand
Strand 2	C	363	364	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	417	first strand
Strand 2	C	424	426	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	12	first strand
Strand 2	D	72	76	parallel
Strand 3	D	110	116	parallel
Strand 4	D	156	161	parallel
Strand 5	D	214	219	parallel
Strand 6	D	289	292	parallel
Strand 7	D	346	351	parallel
Strand 8	D	390	396	parallel
Strand 9	D	8	12	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	225	first strand
Strand 2	D	297	301	parallel
Strand 3	D	309	311	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	360	first strand
Strand 2	D	363	364	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	415	417	first strand
Strand 2	D	424	426	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DT7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DT7